Bootstrap calibration of TRANSMIT for informative missingness of parental genotype data

BMC Genomic Data

Table 1 Comparison of boostrap-calibrated and MAR-based tests

Marker	Allele(s)	MAR Chi Square (df)	MAR P-value	Bootstrap P-value
GATA25A04		1.5966 (5)	0.902	0.938
	184 & 188	0.003 (1)	0.956	0.955
	192	0.334 (1)	0.564	0.600
	196	0.506 (1)	0.477	0.481
	200	0.173 (1)	0.677	0.778
	204	0.111 (1)	0.739	0.754
	208	0.685 (1)	0.408	0.426
ATC6A06		9.325 (5)	0.097	0.378
	113	1.111 (1)	0.292	0.395
	116	1.212 (1)	0.271	0.328
	119	0.411 (1)	0.522	0.784
	122	1.356 (1)	0.244	0.576
	125	4.162 (1)	0.041	0.047
	128 & 131	1.482 (1)	0.223	0.358
GATA49C09		10.472 (10)	0.400	0.722
	158 & 166	4.062 (1)	0.044	0.176
	170	0.053 (1)	0.819	0.828
	174	1.25 × 10^-6 (1)	0.999	0.999
	178	0.012 (1)	0.914	0.919
	182	0.015 (1)	0.902	0.949
	186	0.809 (1)	0.368	0.393
	190	0.193 (1)	0.661	0.751
	194	0.034 (1)	0.855	0.921
	198	1.758 (1)	0.185	0.306
	202	3.838 (1)	0.050	0.059
	206 & 210 & 214	0.201 (1)	0.654	0.749

ISSN: 2730-6844