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Table 5 Summary of linkage results for ALDX2

From: A genome-wide linkage analysis of alcoholism on microsatellite and single-nucleotide polymorphism data, using alcohol dependence phenotypes and electroencephalogram measures

   Affymetrix SNPs Illumina SNPs Microsatellite
Chr Location (cM) LOD (p) IC/Chr LOD (p) IC/Chr LOD (p) IC/Chr
1 42–44   0.942 (0.02) 0.73 (0.03) 0.932 (0.02) 0.68 (0.04) 0.832 (0.07)
  247–259 0.81 (0.03)   0.72 (0.03)   0.68 (0.04)  
2 19–23   0.948 (0.02) 0.86 (0.02) 0.934 (0.02) 0.75 (0.03) 0.845 (0.08)
  226–247 1.49 (0.004)   1.53 (0.004)    
3 90–93 0.99 (0.02) 0.947 (0.01) 0.70 (0.04) 0.938 (0.02)   0.755 (0.08)
6 171–189 1.49 (0.004) 0.947 (0.02) 1.69 (0.003) 0.935 (0.02)   0.803 (0.09)
7 3–9 1.01 (0.02) 0.944 (0.03) 2.25 (0.0006) 0.933 (0.02)   0.898 (0.05)
  59–60 0.64 (0.04)     0.82 (0.03)  
  96–106 1.22 (0.009)   0.85 (0.02)   0.83 (0.03)  
  108–116 0.99 (0.02)   0.87 (0.02)    
9 133–155 1.28 (0.008) 0.947 (0.02) 1.50 (0.004) 0.926 (0.02)   0.782 (0.10)
10 47–49 0.75 (0.03) 0.943 (0.02)   0.924 (0.03)   0.664 (0.08)
  120–130 1.18 (0.01)   1.33 (0.007)    
  141–176 1.97 (0.0013)   1.78 (0.002)   0.74 (0.03)  
12 167–172   0.944 (0.02) 0.94 (0.02) 0.929 (0.03)   0.816 (0.08)
17 30–53 1.44 (0.005) 0.922 (0.05) 1.39 (0.006) 0.914 (0.03) 1.83 (0.002) 0.694 (0.08)
X 30–46 1.07 (0.013) 0.915 (0.03) 0.89 (0.02) 0.902 (0.08)   0.744 (0.17)
  1. Summary of maximum LOD scores and the corresponding p-values (<0.05) for linkage regions for alcohol dependence phenotype ALDX2. Results are shown for microsatellites, Affymetrix SNPs and Illumina SNPs. The mean and standard deviation of IC are given for each chromosome.