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Table 5 Type I error count in densely mapped simulated data

From: Investigation of altering single-nucleotide polymorphism density on the power to detect trait loci and frequency of false positive in nonparametric linkage analyses of qualitative traits

Trait Marker set Pop. dz. freq. # of replicates with data Mean number of false positives below p-value criterion ofa
     0.05 0.01 0.0017 0.001 0.0001 0.000049
Dominant          
   D8044 SNP 1 cM 0.06 300 0.157 0.063 0 0 0 0
  SNP 0.3 cM    0.177 0.053 0.010 0.007 0 0
   D8050 SNP 1 cM 0.18 300 0.146 0.003 0.007 0.007 0.003 0
  SNP 0.3 cM    0.18 0.037 0.013 0.007 0.003 0
   D8051 SNP 1 cM 0.50 300 0.230 0.057 0.02 0.013 0 0
  SNP 0.3 cM    0.280 0.100 0.02 0.017 0 0
Recessive          
   R8045 SNP 1 cM 0.08 300 0.113 0.037 0.007 0.003 0 0
  SNP 0.3 cM    0.147 0.050 0.003 0 0 0
   R8050 SNP 1 cM 0.01 229 0.039 0.004 0 0 0 0
  SNP 0.3 cM    0.037 0.004 0 0 0 0
   R8051 SNP 1 cM 0.22 300 0.160 0.060 0.020 0.020 0.007 0.007
  SNP 0.3 cM    0.183 0.063 0.020 0.003 0.007 0.007
  1. aMean number of false positive results in the ~18 cM unlinked region per replicate with p-value below the following criteria.