Skip to main content

Table 6 Type I error in COGA data

From: Investigation of altering single-nucleotide polymorphism density on the power to detect trait loci and frequency of false positive in nonparametric linkage analyses of qualitative traits

Trait SNP Set Dz. freq. Number of false positive below p-value criterion ofa
    0.05 0.01 0.0017 0.001 0.0001 0.000049
Dominant         
   Drs0041510 MS 0.14 7 2 2 2 0 0
  SNP 3 cM   10 3 1 0 0 0
  SNP 2 cM   7 1 0 0 0 0
  SNP 1 cM   15 2 1 1 0 0
  SNP 0.6 cM   12 5 1 1 0 0
  SNP 0.3 cM   14 5 2 1 0 0
  SNP 0.25   18 8 2 1 0 0
   Dtsc0061481 MS 0.31 6 1 1 0 0 0
  SNP 3 cM   8 4 2 1 0 0
  SNP 2 cM   12 6 2 1 0 0
  SNP 1 cM   17 7 0 0 0 0
  SNP 0.6 cM   16 6 2 2 0 0
  SNP 0.3 cM   15 7 1 1 0 0
  SNP 0.25   24 9 3 1 0 0
Recessive         
   Rtsc0061581 MS 0.03 8 0 0 0 0 0
  SNP 3 cM   7 0 0 0 0 0
  SNP 2 cM   7 0 0 0 0 0
  SNP 1 cM   9 0 0 0 0 0
  SNP 0.6 cM   10 0 0 0 0 0
  SNP 0.3 cM   9 0 0 0 0 0
  SNP 0.25   13 1 0 0 0 0
   Rtsc2832191 MS 0.22 6 4 2 0 0 0
  SNP 3 cM   10 3 1 0 0 0
  SNP 2 cM   12 3 2 2 0 0
  SNP 1 cM   13 4 1 1 0 0
  SNP 0.6 cM   14 6 2 1 0 0
  SNP 0.3 cM   16 6 1 1 1 0
  SNP 0.25   23 6 2 2 0 0
  1. aNumber of false positive regions across the 18 unlinked chromosomes with p-value below the following criteria.