Table 1 Ten SNPs on chromosome 4 with the smallest p-values. The ten SNPs that had the smallest p-values (unadjusted) associated with ECB21 on chromosome 4 as estimated by PBAT. Corresponding MERLIN LOD scores are also shown.
From: Comparison of linkage and association strategies for quantitative traits using the COGA dataset
SNP | Allele | Allele frequency | No. of uninformative families | p-value (PBAT) | LOD (MERLIN) |
|---|---|---|---|---|---|
TSC0053776 | 1 | 0.17 | 117 | 0.0011 | 0.22 |
TSC0286605 | 1 | 0.38 | 105 | 0.0020 | 2.18 |
TSC0528073 | 1 | 0.29 | 114 | 0.0033 | 0.33 |
TSC0750487 | 2 | 0.33 | 110 | 0.0081 | 0.00 |
TSC0568024 | 1 | 0.33 | 111 | 0.0085 | 0.00 |
TSC0358705 | 1 | 0.25 | 117 | 0.0087 | 0.31 |
TSC0047225 | 1 | 0.37 | 95 | 0.0132 | 0.21 |
TSC0060984 | 1 | 0.30 | 120 | 0.0148 | 0.14 |
TSC1398038 | 1 | 0.24 | 115 | 0.0149 | 0.01 |
TSC0052464 | 2 | 0.46 | 107 | 0.0154 | 0.00 |