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Table 1 Ten SNPs on chromosome 4 with the smallest p-values. The ten SNPs that had the smallest p-values (unadjusted) associated with ECB21 on chromosome 4 as estimated by PBAT. Corresponding MERLIN LOD scores are also shown.

From: Comparison of linkage and association strategies for quantitative traits using the COGA dataset

SNP Allele Allele frequency No. of uninformative families p-value (PBAT) LOD (MERLIN)
TSC0053776 1 0.17 117 0.0011 0.22
TSC0286605 1 0.38 105 0.0020 2.18
TSC0528073 1 0.29 114 0.0033 0.33
TSC0750487 2 0.33 110 0.0081 0.00
TSC0568024 1 0.33 111 0.0085 0.00
TSC0358705 1 0.25 117 0.0087 0.31
TSC0047225 1 0.37 95 0.0132 0.21
TSC0060984 1 0.30 120 0.0148 0.14
TSC1398038 1 0.24 115 0.0149 0.01
TSC0052464 2 0.46 107 0.0154 0.00