Table 3 Classification of the selection methods for the power of the subsets to detect an association
Method I (Johnson et al.) | Method II (Stram et al.) | Method III (Cousin et al.) | Method IV 0.5 (Carlson et al.) | Method IV 0.8 (Carlson et al.) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
haplot. testsa | SL testsb | haplot. testsa | SL testsb | haplot. testsa | SL testsb | haplot. testsa | SL testsb | haplot. testsa | SL testsb | |
C3AR1 | 5 | 5 | 4 | 4 | 1 | 3 | 1 | 1 | 1 | 1 |
CCR2 | 5 | 5 | 1 | 4 | 1 | 1 | 1 | 3 | 1 | 1 |
CEBPB | 5 | 4 | 5 | 4 | 1 | 1 | 2 | 2 | 3 | 3 |
CSF2 | 4 | 5 | 5 | 4 | 1 | 1 | 1 | 3 | 1 | 1 |
FCN3 | 5 | 5 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
FGL2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
IFNG | 5 | 5 | 4 | 3 | 2 | 1 | 1 | 4 | 2 | 1 |
IL13 | 3 | 5 | 5 | 4 | 4 | 1 | 2 | 3 | 1 | 1 |
IL24 | 5 | 5 | 2 | 1 | 1 | 4 | 2 | 1 | 2 | 1 |
IL9 | 1 | 2 | 5 | 4 | 1 | 2 | 4 | 5 | 1 | 1 |
LTA | 4 | 5 | 4 | 4 | 1 | 1 | 1 | 3 | 3 | 2 |
LTB | 5 | 5 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
MC1R | 2 | 5 | 4 | 3 | 3 | 4 | 1 | 2 | 4 | 1 |
PLAU | 4 | 5 | 5 | 4 | 3 | 3 | 1 | 2 | 2 | 1 |
PROCR | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
RELA | 5 | 5 | 1 | 4 | 1 | 1 | 1 | 1 | 1 | 1 |
SERPINC1 | 4 | 5 | 5 | 1 | 1 | 2 | 2 | 4 | 3 | 3 |
TNF | 1 | 1 | 4 | 4 | 3 | 3 | 2 | 2 | 4 | 5 |
TRADD | 5 | 5 | 3 | 4 | 3 | 1 | 1 | 2 | 1 | 2 |
VTN | 4 | 4 | 2 | 2 | 5 | 5 | 1 | 1 | 2 | 2 |
total | 74 | 83 | 63 | 58 | 36 | 38 | 28 | 43 | 36 | 31 |
final rank | 5 | 5 | 4 | 4 | 2 | 2 | 1 | 3 | 2 | 1 |