Table 2 Error rates obtained according to the level of missing information in the APOE and simulated datasets
From: Computation of haplotypes on SNPs subsets: advantage of the "global method"
APOE | |||||
|---|---|---|---|---|---|
MD | Method | IER | SimER | IF | Res rate |
0% | Global | 1.94% | 0.45% | 0.986 | 100% |
Local | 4.88% | 1.22% | 0.97 | 100% | |
2% | Global | 2.24% | 0.48% | 0.986 | 100% |
Local | 5.12% | 1.19% | 0.972 | 100% | |
5% | Global | 3.20% | 0.54% | 0.987 | 100% |
Local | 5.64% | 1.83% | 0.978 | 100% | |
10% | Global | 4.41% | 0.68% | 0.979 | 100% |
Local | 6.89% | 1.91% | 0.972 | 100% | |
15% | Global | 6.98% | 1.09% | 0.974 | 100% |
Local | 10.33% | 1.97% | 0.964 | 99.75% | |
20% | Global | 12.35% | 2.09% | 0.954 | 100% |
Local | 15.21% | 2.54% | 0.943 | 99.21% | |
Simulated | |||||
MD | Method | IER | SimER | IF | Res rate |
0% | Global | 0.14% | 0.02% | 0.996 | 100% |
Local | 0.81% | 0.10% | 0.989 | 100% | |
2% | Global | 0.19% | 0.02% | 0.989 | 100% |
Local | 1.26% | 0.13% | 0.982 | 100% | |
5% | Global | 0.25% | 0.03% | 0.982 | 100% |
Local | 1.46% | 0.18% | 0.975 | 100% | |
10% | Global | 0.46% | 0.05% | 0.968 | 100% |
Local | 2.65% | 0.32% | 0.961 | 100% | |
15% | Global | 0.83% | 0.09% | 0.954 | 100% |
Local | 4.80% | 0.59% | 0.947 | 100% | |
20% | Global | 1.51% | 0.16% | 0.941 | 100% |
Local | 8.70% | 1.06% | 0.934 | 100% | |