Table 4 Quantiles for the variance ratios between sampling term BLUP and base allele BLUP split into the two cases where the marker homozygote was either simulated as QTL homozygous or QTL heterozygous

5% additive QTL

Homozygotes

0.05

0.07

0.13

0.17

0.25

0.39

0.67

Heterozygotes

0.18

0.21

0.34

0.54

0.92

2.09

2.58

10% additive QTL

Homozygotes

0.08

0.10

0.12

0.15

0.21

0.37

0.40

Heterozygotes

0.26

0.30

0.81

1.19

1.83

2.74

7.06

20% additive QTL

Homozygotes

0.08

0.09

0.12

0.15

0.19

0.34

0.41

Heterozygotes

0.63

0.94

1.44

1.70

2.29

3.93

9.73