From: DNA repair gene XRCC1 polymorphisms and bladder cancer risk
Polymorphisms* | Genotypes | Controls, n (%) | Cases, n (%) | aOR (95% CI) | P value |
---|---|---|---|---|---|
EX1-1139 | C/C | 328 (61.5) | 295 (59.0) | 1.00 | reference |
rs2682586 | C/T | 187 (35.1) | 181 (36.2) | 1.07 (0.82–1.39) | 0.62 |
Promoter | T/T | 18 (3.4) | 24 (4.8) | 1.42 (0.74–2.71) | 0.29 |
T allele freq. | 0.209 | 0.229 | |||
EX1-1128 rs2682585 | C/C C/T | 319 (60.3) 189 (35.7) | 287 (59.1) 177 (36.4) | 1.00 1.05 (0.81–1.37) | reference 0.71 |
Promoter | T/T | 21 (4.0) | 22 (4.5) | 1.15 (0.61–2.18) | 0.66 |
T allele freq. | 0.218 | 0.227 | |||
EX1-900 | -/- | 196 (35.5) | 173 (34.0) | 1.00 | reference |
rs3213239 | -/+ | 267 (48.2) | 256 (50.3) | 1.04 (0.79–1.36) | 0.79 |
Promoter | +/+ | 91 (16.4) | 80 (15.7) | 1.02 (0.71–1.48) | 0.91 |
+ allele freq. | 0.405 | 0.409 | |||
EX-128 | C/C | 187 (33.6) | 174 (32.8) | 1.00 | reference |
rs3213245 | C/T | 275 (49.4) | 266 (50.2) | 1.00 (0.76–1.31) | 0.97 |
5'UTR | T/T | 94 (16.9) | 90 (17.0) | 1.06 (0.74–1.52) | 0.76 |
T allele freq. | 0.416 | 0.421 | |||
EX-52 | C/C | 548 (97.2) | 520 (97.6) | 1.00 | reference |
rs2307187 | C/T | 16 (2.8) | 13 (2.4) | 0.91 (0.43–1.92) | 0.80 |
5'UTR | T/T | 0 | 0 | NC | NC |
T allele freq. | 0.014 | 0.012 | |||
Val72Ala | C/C | 562 (100) | 521 (100) | 1.00 | reference |
rs25496 | C/T | 0 | 0 | NC | NC |
Exon 3 | T/T | 0 | 0 | NC | NC |
T allele freq. | 0 | 0 | |||
Arg194Trp | C/C | 498 (88.6) | 476 (89.0) | 1.00 | reference |
rs1799782 | C/T | 61 (10.9) | 56 (10.4) | 0.95 (0.64–1.41) | 0.81 |
Exon 6 | T/T | 3 (0.5) | 3 (0.6) | 1.01 (0.19–5.23) | 0.99 |
C/T + T/T | 64 (11.4) | 59 (11.0) | 0.95 (0.65–1.40) | 0.81 | |
T allele freq. | 0.060 | 0.058 | |||
IVS7-33 | C/C | 518 (91.7) | 484 (89.6) | 1.00 | reference |
rs1799780 | C/T | 47 (8.3) | 55 (10.1) | 1.30 (0.85–1.97) | 0.22 |
Intron 7 | T/T | 0 (0) | 1 (0.2) | ∞ | NC |
C/T + T/T | 47 (8.3) | 56 (10.4) | 1.33 (0.88–2.01) | 0.18 | |
T allele freq. | 0.042 | 0.053 | |||
Pro206Pro | G/G | 170 (31.2) | 162 (31.4) | 1.00 | reference |
rs915927 | G/A | 270 (49.5) | 260 (50.5) | 0.96 (0.73–1.28) | 0.80 |
Exon 7 | A/A | 105 (19.3) | 93 (18.1) | 0.91 (0.64–1.31) | 0.63 |
A allele freq. | 0.440 | 0.433 | |||
Arg280His | G/G | 516 (92.1) | 456 (88.9) | 1.00 | reference |
rs25489 | G/A | 41 (7.3) | 54 (10.5) | 1.52 (0.98–2.34) | 0.06 |
Exon 9 | A/A | 3 (0.6) | 3 (0.6) | 1.25 (0.25–6.34) | 0.78 |
G/A + A/A | 44 (7.9) | 57 (11.1) | 1.50 (0.98–2.28) | 0.06 | |
A allele freq. | 0.042 | 0.058 | |||
Arg399Gln | G/G | 226 (40.4) | 218 (41.0) | 1.00 | reference |
rs25487 | G/A | 259 (46.2) | 248 (46.6) | 0.97 (0.75–1.26) | 0.83 |
Exon 10 | A/A | 75 (13.4) | 66 (12.4) | 0.94 (0.64–1.39) | 0.76 |
A allele freq. | 0.365 | 0.357 | |||
Gln632Gln | G/G | 176 (31.4) | 173 (32.2) | 1.00 | reference |
rs3547 | G/A | 275 (49.0) | 268 (49.9) | 0.94 (0.72–1.24) | 0.67 |
Exon 17 | A/A | 110 (19.6) | 96 (17.8) | 0.87 (0.61–1.23) | 0.43 |
A allele freq. | 0.441 | 0.428 | |||
EX17-123 | -/- | 492 (89.5) | 448 (88.4) | 1.00 | reference |
rs3213401 | -/+ | 55 (10.0) | 56 (11.0) | 1.18 (0.79–1.76) | 0.43 |
3'UTR | +/+ | 3 (0.5) | 3 (0.6) | 0.78 (0.15–4.09) | 0.77 |
-/+ plus +/+ | 58 (10.5) | 59 (11.6) | 1.15 (0.78–1.70) | 0.48 | |
+ allele freq. | 0.055 | 0.061 | |||
EX17-127 | G/G | 337 (64.1) | 320 (65.6) | 1.00 | |
rs2682558 | G/A | 162 (30.8) | 142 (29.1) | 0.91 (0.69–1.20) | 0.48 |
3'UTR | A/A | 27 (5.1) | 26 (5.3) | 1.13 (0.64–1.99) | 0.68 |
A allele freq. | 0.205 | 0.199 |