Haplotype | MLOCUS | GENECOUNTING | ||||
---|---|---|---|---|---|---|
 | Cases | Controls | Combined | Cases | Controls | Combined |
111111 | 0.005 | 0.000 | 0.011 | 0.021 | 0.000 | 0.012 |
111112 | 0.006 | 0.007 | 0.007 | 0.008 | 0.007 | 0.008 |
111121 | 0.499 | 0.470 | 0.480 | 0.482 | 0.472 | 0.479 |
111221 | 0.029 | 0.043 | 0.034 | 0.027 | 0.043 | 0.033 |
112111 | 0.001 | 0.000 | 0.002 | 0.004 | 0.000 | 0.002 |
112112 | 0.392 | 0.376 | 0.385 | 0.384 | 0.370 | 0.379 |
112121 | 0.021 | 0.026 | 0.021 | 0.021 | 0.025 | 0.023 |
112122 | 0.001 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
112221 | 0.001 | 0.000 | 0.001 | 0.001 | 0.000 | 0.001 |
221112 | 0.043 | 0.074 | 0.055 | 0.050 | 0.078 | 0.061 |
222112 | 0.001 | 0.004 | 0.003 | 0.000 | 0.004 | 0.002 |
222212 | 0.001 | 0.000 | 0.001 | 0.001 | 0.000 | 0.000 |
Log likelihood | -820.072 | -573.826 | -1458.75 | -931.20 | -601.13 | -1548.8 |
Likelihood ratio statistic | Â | Â | 129.7 | Â | Â | 33.0 |
Asymptotic P value assuming 11 df | Â | Â | 1.8*10-15 | Â | Â | 5.4*10-4 |
Empirical P value from permutation test | Â | Â | Â | Â | Â | 2.8*10-4 |