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Table 1 Primer sequences used to map the breakpoints.

From: High-throughput genotyping of a common deletion polymorphism disrupting the TRY6 gene and its association with breast cancer risk

Primer combination

Primer sequence

Product size (bp)

1F/R*

F: GAC ACA AAG ACG TGG GAG TC

R: GAG GCA GCC TGG CTG GGA

384

2F/R*

F: GTG AAA GAG GCT GGG AAG GTG

R: CCC TTC TTT CAC AGC TGG GGC

249

3F/R*

F: ACA GGT GAT AAA AGC CCG AGC C

R: GCC CTC AGA TGA TTA TTG GTG AAG T

144

4F /R

F: TTG AGA GAT CTA GAA GCC CCA C

R: GCC CTC AGA TGA TTA TTG GTG AAG T

247

5F/R*

F: TAA GTC TCC TTT TAG ATG CCA CC

R: GGA GTT TTC ATG TAA GCA GCA GTG

261

6F/R*

F: CTC CAG AGC TAT AAA GAC GGG C

R: CGG CAG GGC ATA TGT CTG CCA

159

7F/R*

F: AAA AGA GAG AAG CAT TCA GTG GG

R: CGG TTG CTT CCT GCT AAT TAG AA

261

8F/R*

F: GAA TGA ACA GTT CAT CTA TGC G

R: CGG TGT GCT TCG TTC TGG AAA T

272

9F/R*

F: TCT GAG GGC TGT GAC ACC ATG

R: GAC ACA GGT GAC ATG AAG CCT G

100

10F/R

F: CTG GGA AAG GAT CCC TCA AG

R: GTC AAC TGT GGC TGC CAG TG

160

11F/R

F: ACA TGT TCA GGG ACA ACA CAG C

R: CAC ACC TCT CTG CTC ATG AAT AA

97

12F/R

F: AAC TCT GAC ATG TGA TCA GGG G

R: CAT GTG CAT CCT GTC ATA GGT TC

143

13F/R

F: AAG CAG CCA CAG GCT GGG AGC

R: CCT GGC TGG GAG TTT TGC AGT

273

4aF/R

F: GAT GAA TTG GGG TAT CAG GAA TG

R: GCT CAC TAA TCC ACT GTG TTT CAT

437

4bF/R*

F: CTG TGA TTG TTT AAG GAA GAG CG

R: CAC AAC TCT CTG CTC ACA GAT AA

380

10aF/R

F: CCC AAG TGT TTT TGT GTG GCG AAT GG

R: CAG CTA CCC ATG CTC AAT TTG G

530

10bF/R

F: GGA AGG ACA GTG GTT TGG CAT G

R: GTC AAC TGT GGC TGC CAG TG

620

  1. * fragment is within the deletion region
  2. primers used for triplex PCR