The PhenoGen Informatics website: tools for analyses of complex traits

BMC Genomic Data

Table 2 Data available on PhenoGen

Current array count
Organism	Category/genetic modification	Open access	Requires permission	Total
Fly		0	24	24
Human		0	4	4
Mouse		557	142	699
	C57BL/6JxFVB/N F1	12	0	12
	Gene knock out	8	16	24
	Inbred strain	229	78	307
	Knock down	20	0	20
	None	0	4	4
	Recombinant inbred strain	168	0	168
	Selective breeding	70	0	70
	Transgenic	50	44	94
Rat		0	302	302
	Congenic strain	0	10	10
	Inbred strain	0	16	16
	None	0	7	7
	Recombinant inbred strain	0	146	146
	Selective breeding	0	123	123
Total arrays		557	472	1029

At present PhenoGen has microarray data from 1029 "samples" from different categories. Each "sample" represents mRNA obtained from an individual (animal, human or insect) sample and hybridized to an array (either Affymterix, CodeLink or a Custom oligonucleotide array). Data from any of these well-identified individual arrays can be used to conduct an "in-silico" experiment.

ISSN: 2730-6844