SERpredict: Detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements

Table 5 Human tumor-specific TE-exons

Gene	TE	Chr.	LOD
Centrosomal protein of 27 kDa	Alu	15	2.93
G-protein coupled receptor 56 precursor	Alu	16	2.8
T-cell activation NFKB-like protein	Alu	19	2.76
Dipeptidyl peptidase 9	Alu	19	3.49
NADH dehydrogenase	Alu	19	2.07
YY1-associated protein 1	Alu	1	3.15
Centromere protein R	Alu	1	2.74
Selenoprotein T precursor.	Alu	3	2.64
Putative ribosomal RNA methyltransferase 2	Alu	7	2.4
GPI ethanolamine phosphate transferase 3	Alu	9	2.07
Protein RMI1 homolog.	Alu	9	2.03
NHP2-like protein 1	L1	22	9.1
Zinc finger protein DZIP1	L2	13	2.34
Dynein light chain 2A. cytoplasmic	MIR	20	4.43
Protein NipSnap1.	MIR	22	6.55
ST6	MIR	9	2.69
Tripartite motif-containing protein 14.	MIR	9	2.86
40S ribosomal protein SA	ERV1	3	12.27
DNA directed RNA polymerase II	MaLR	7	2.34
CDNA FLJ33708 fis, clone BRAWH2007862.	MaLR	6	2.18
Beta-microseminoprotein precursor	MER1	10	2.92

Potentially tumor-specific TE-exons in the human transcriptome. From left to right: the gene name in which the exonization occurred, the transposed elements family name, the chromosome number and the LOD score.

ISSN: 2730-6844