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Table 4 Association between the CAPN3 and CAST SNP and peak force in the longissimus muscle

From: Variation at the Calpain 3 gene is associated with meat tenderness in zebu and composite breeds of cattle

Locus Breed p01 Vr2 a3kg SEa4 P a 5 α6kg SEα Pα
CAPN3          
c.53T>G BRM7 0.29 0.0111 -0.046 0.082 0.578 -0.103 0.060 0.088
c.53T>G BEL8 0.15 0.0043 0.037 0.057 0.520 0.089 0.044 0.046
c.53T>G SGT9 0.20 0.0038 0.005 0.074 0.942 -0.058 0.058 0.315
c.1538+225G>T BRM 0.52 0.0172 -0.147 0.066 0.026 -0.144 0.060 0.016
c.1538+225G>T BEL 0.92 0.0052 -0.380 0.046 0.000† 0.003 0.037 0.944
c.1538+225G>T SGT 0.78 0.0040 0.108 0.066 0.102 0.068 0.060 0.260
c.2443-103G>C BRM 0.29 0.0108 -0.067 0.080 0.402 -0.115 0.063 0.068
c.2443-103G>C BEL 0.15 0.0061 0.083 0.065 0.203 0.114 0.053 0.031
c.2443-103G>C SGT 0.16 0.0021 -0.005 0.087 0.959 -0.058 0.065 0.371
CAST          
c.2832A>G BRM 0.56 0.0088 -0.113 0.065 0.082 -0.113 0.061 0.064
c.2832A>G BEL 0.77 0.0195 -0.120 0.047 0.011 -0.171 0.040 0.000†
c.2832A>G SGT 0.70 0.0142 -0.120 0.061 0.051 -0.140 0.055 0.011
  1. 1Allele frequency for allele 0, 2 proportion of the residual variance explained by the SNP, 3 additive effect, 4 standard error of the additive effect, 5 P value of the additive effect, 6 allele substitution effect, 7 BRM Brahman, 8 BEL Belmont Red, 9 SGT Santa Gertrudis, † P < 0.0001