Table 1 Polymorphic markers in Col-0 and Uk-4 ecotypes used to map the DSTM1 locus
Marker | Chr | Type | Enzyme | Primer Forward (5'→3') | Primer Reverse (5'→3') | Reference |
|---|---|---|---|---|---|---|
m305 | I | CAPS | HaeIII | TGAAGCTAATATGCACAGGAG | TTCTCCAGACCACATGATTAT | TAIR |
g11447 | I | CAPS | EcoRV | CAGTGTGTATCAAAGCACCA | GTGACAGACTTGCTCCTACTG | TAIR |
nga59 | I | SSLP | - | TTAATACATTAGCCCAGACCCG | GCATCTGTGTTCACTCGCC | TAIR |
nga280 | I | SSLP | - | GGCTCCATAAAAAGTGCACC | CTGATCTCACGGACAATAGTGC | TAIR |
T27E13 | II | CAPS | NlaIII | GGAATCATCGCTTGACGACTCC | GGACTTTTCGCCGTGAAGTCG | BAR |
ML | II | CAPS | SnabI | CGGAAACACGAAGCTGATGAGTTGGG | CGAGAACAAAATGTGTACGGTGTG | TAIR |
T9D9 | II | CAPS | MboI | GGTCTCTTTGTCGCAACACTCC | CATGAATGTTGTTTCCAAGTATCC | TAIR |
ER | II | CAPS | DdeI | GAGTTTATTCTGTGCCAAGTCCCTG | CTAATGTAGTGATCTGCGAGGTAATC | TAIR |
GBF3 | II | CAPS | HindIII | AGCGAAGAAAATCACCCAAAGACAGACTC | CTCATTTCATTCTGTTTCTCCGTCAAGTG | TAIR |
Ks450 | II | CAPS | HpaII | CGGTAGCCGATCCTGATTTGATCAG | TTCCTTATCTCCTTGTCTAACTTCC | Muramoto et al. (1999) |
nmF | II | CAPS | BstXI | GGTTTATCACCAAACCAGTTTATTG | TTGTTTGTTCGGGTCTCTCC | Matsumoto & Okada (2001) |
nmG | II | CAPS | EcoRV | GGACAGGTAAGAGACAGTAG | AGAAGAGGAGCGTGTATGCT | Matsumoto & Okada (2001) |
Ve017 | II | CAPS | PstI | GAGCAATCCAGTAGAGGATA | CTTGAAGCTTAAATCTCAGC | TAIR |
11444 | II | CAPS | EcoRV | CCGGTTTTCGTTCCTGTGTA | CTAAGATCAACCACTGTCCTAGC | BAR |
EMB1187 | II | CAPS | PstI | AACCTCAGCTGTGGGTTGAT | CATCATTCAGCATGAAGTTTCC | BAR |
11697 | II | CAPS | HpaII | ATGGGAAGCAAAGCTATTGTATCAG | AACGTTGGAGAGAGACGACA | BAR |
F15K20.13 | II | CAPS | EcoRI | CACTTCTTCATCGCCGTCTG | CACCTCCTCCACCTCCAGAT | BAR |
ATIPT2 | II | CAPS | EcoRV | TTTAAGAATTTTGAAGTCCTATACGTT | TCAAGAAACTGTTGTGACTGGA | BAR |
F24D13.7 | II | CAPS | DraI | GAACTCATTGCCAAAGACGA | TCACAGTGAACCCTCTTCCTG | BAR |
T17D12.4 | II | CAPS | EcoRV | CAACCACTTATTTGGTACAAGGTG | CTTTTCCAAAGTGCTTACCACA | BAR |
12185 | II | CAPS | HindIII | CTCGTGGGTTGCGAAAAG | CAGAGCTCTTCATCTTCATCTTCA | BAR |
nga1145 | II | SSLP | - | GCACATACCCACAACCAGAA | CCTTCACATCCAAAACCCAC | TAIR |
nga168 | II | SSLP | - | GAGGACATGTATAGGAGCCTCG | TCGTCTACTGCACTGCCG | TAIR |
ciw3 | II | SSLP | - | GAAACTCAATGAAATCCACTT | TGAACTTGTTGTGAGCTTTGA | TAIR |
PLS3 | II | SSLP | - | TAGTCGTTTCTCTGGTTGTAG | TTGCCTGTCGATGTAGATTTGT | TAIR |
PLS7 | II | SSLP | - | GATGAATCTTCTCGTCCAAAAT | GACAAACTAAACAACATCCTTCTT | TAIR |
PLS9 | II | SSLP | - | GAAATTACGCCGAAAGGTC | CGTCACGAGAGGCACATC | TAIR |
CZSOD2 | II | SSLP | - | GAATCTCAATATGTGTCAAC | GCATTACTCCGGTGTCGTC | TAIR |
C4H | II | SSLP | - | GTTCATGGACGGATGTGTATGC | CTAGTGGTGGTTAAAATATACGCG | TAIR |
g4711 | III | CAPS | HindIII | CCTGTGAAAAACGACGTGCAGTTTC | ACCAAATCTTCGTGGGGCTCAGCAG | TAIR |
Arlim15.1 | III | CAPS | EcoRI | TGCTGCTTTATTTTGTCGCGATGTT | GCCAGTTTTTTCCTGCACATCAATC | TAIR |
GAPC | III | CAPS | EcoRV | ACGGAAAGACATTCCAGTC | CTGTTATCGTTAGGATTCGG | TAIR |
Nga172 | III | SSLP | - | CATCCGAATGCCATTGTTC | AGCTGCTTCCTTATAGCGTCC | TAIR |
nga112 | III | SSLP | - | CTCTCCACCTCCTCCAGTACC | TAATCACGTGTATGCAGCTGC | TAIR |
nga12 | III IV | SSLP | - | TGATGCTCTCTGAAACAAGAGC | AATGTTGTCCTCCCCTCCTC | TAIR |
AG | IV | CAPS | XbaI | CAAACACCATTTAATCTTGACA | CAACAGGTTTCTTCTTCTTCTC | TAIR |
g8300 | IV | CAPS | HindIII | GGCGGCACTGGTGGTGTAGG | GTTGTCCCCTGTTAAAAGGAGCC | TAIR |
nga1139 | IV | SSLP | - | TAGCCGGATGAGTTGGACC | TTTTTCCTTGTGTTGCATTCC | TAIR |
EG7F2 | V | CAPS | XbaI | GCATAGAATTTGACGATAACGAGC | GATCTGTGTAGGACTACGAGAC | TAIR |
PLC1 | V | CAPS | HindIII | GAATCAGCCATTATCGCATTAC | GGGAACTCAAACTCCTTGTCC | TAIR |
nga158 | V | SSLP | - | ACCTGAACCATCCTCCGTC | TCATTTTGGCCGACTTAGC | TAIR |
nga129 | V | SSLP | - | CACACTGAAGATGGTCTTGAGG | TCAGGAGGAACTAAAGTGAGGG | TAIR |
nga151 | V | SSLP | - | CAGTCTAAAAGCGAGAGTATGATG | GTTTTGGGAAGTTTTGCTGG | TAIR |
AThPhyC | V | SSLP | - | CTCAGAGAATTCCCAGAAAAATCT | AAACTCGAGAGTTTTGTCTAGATC | TAIR |
ciw10 | V | SSLP | - | CCACATTTTCCTTCTTTCATA | CAACATTTAGCAAATCAACTT | TAIR |