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Table 2 Significant intragenic SNPs above the Bonferroni genome-wide threshold of 0.05

From: Genome-wide association study for somatic cell score in Valdostana Red Pied cattle breed using pooled DNA

Illumina SNP name Genbank SNP code P-Value BTA SNP location Gene symbol
BovineHD0100007623 rs137585939 4.43E-08 1 26254309 ROBO1
BovineHD0100040084 rs43273786 5.41E-08 1 141228619 NEK11
BovineHD0200004154 rs110997154 3.76E-08 2 15142189 SSFA2
BovineHD0300000560 rs110459674 inf 3 2612333 TADA1
BovineHD0300002104 rs110093914 1.87E-08 3 7276675 DDR2
BovineHD0300018913 rs42371455 1.87E-09 3 66866123 LPHN2
BovineHD0300023699 rs135870054 8.96E-10 3 87296944 ALG6
BovineHD0400026934 rs109307332 4.69E-08 4 98543003 PLXNA4
BovineHD0500003126 rs134685896 3.26E-10 5 12834395 ACSS3
BovineHD0700010213 rs133885406 4.73E-08 7 33526558 HSD17B4
BovineHD0900019961 rs136413030 3.70E-08 9 73355572 VNN1
BovineHD1000004333 rs43612234 5.32E-10 10 12722576 MEGF11
BovineHD1000009424 rs43623003 6.65E-08 10 28079552 MIR2284Z-1
BovineHD1000009428 rs110034517 5.56E-09 10 28102288 MIR2284Z-1
BovineHD1000017503 rs42486408 1.16E-09 10 60793897 TRPM7
BovineHD1100003814 rs109489659 5.53E-12 11 11771322 CCT7
BovineHD1300006368 rs109943824 1.12E-08 13 20845530 PLXDC2
BovineHD1300022672 rs41710487 4.53E-10 13 78416778 KCNB1
BovineHD1500008135 rs134980659 6.49E-08 15 28399876 THY1
Hapmap40064-BTA-36665 rs41631137 4.65E-12 15 33953859 PIK3C2A
BovineHD1500015036 rs41769292 5.15E-09 15 50730325 NUP98
BovineHD1500015037 rs134338365 2.50E-10 15 50733648 NUP98
BTB-00604170 rs41769258 5.84E-10 15 50753778 NUP98
BovineHD1500015042 rs41769237 3.41E-10 15 50765770 NUP98
BovineHD1500015044 rs109649273 6.55E-08 15 50769861 NUP98
BovineHD1500015047 rs41768429 7.66E-12 15 50774198 NUP98
BovineHD1500015049 rs41768423 1.42E-08 15 50780537 NUP98
BovineHD1500015051 rs41768414 6.94E-11 15 50784307 NUP98
BovineHD1500015054 rs41768364 7.12E-08 15 50792403 NUP98
BovineHD1500015055 rs109966062 1.99E-08 15 50795681 NUP98
BovineHD1500015056 rs41768379 9.17E-13 15 50799229 NUP98
BovineHD4100012071 rs136525289 7.93E-09 15 51638163 PDE2A
BTA-18105-no-rs rs109715014 4.33E-09 15 62952170 CCDC73
BovineHD1600009946 rs41798963 4.62E-08 16 31290905 CEP170
BovineHD1600021693 rs41819133 7.33E-08 16 71743691 CAMK1G
BovineHD1700002750 rs110828704 1.11E-09 17 10472292 NR3C2
BovineHD1700018352 rs135157738 2.29E-09 17 64466089 RPH3A
BovineHD1700019237 rs110644998 2.43E-10 17 67344705 CORO1C
BovineHD1700019238 rs134453171 1.90E-09 17 67347843 CORO1C
BovineHD1700020721 rs109085689 4.61E-08 17 72364594 MTMR3
BovineHD1700021131 rs135044766 4.88E-08 17 73638738 DEPDC5
BovineHD1700021132 rs135814317 7.10E-08 17 73640453 DEPDC5
BovineHD1900006167 rs134967563 7.01E-10 19 20731168 SSH2
BovineHD4100014346 rs29017164 2.41E-13 19 57590345 ATP5H
BovineHD2100001405 rs133992914 6.47E-08 21 6826694 IGF1R
ARS-BFGL-NGS-10830 rs109014211 1.74E-09 21 14303664 SLCO3A1
BovineHD2200009526 rs110064285 8.84E-09 22 33753508 FAM19A1
BovineHD2200009645 rs135018045 3.20E-08 22 34006051 FAM19A1
BovineHD2200009658 rs133223316 5.38E-09 22 34051778 FAM19A1
BovineHD2300014695 rs110724706 4.60E-09 23 50469508 TUBB2B
BovineHD2500003334 rs42064606 1.77E-08 25 13011549 SHISA9
BovineHD2500003336 rs109087355 2.45E-09 25 13017281 SHISA9
  1. Genes and SNPs location as in the Btau4.6.1 assembly; gene symbol as in GenBank.