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Table 3 List of chromosome regions strongly associated to SCS

From: Genome-wide association study for somatic cell score in Valdostana Red Pied cattle breed using pooled DNA

BTA

Start*

End*

Lenght (BP)

N. SNPs

Genbank SNP code

1

21625461

21632949

7488

3

rs110141424; rs42365792; rs42367069

1

27814460

28017039

202579

7

rs135454183; rs110174548; rs134436790; rs136371716; rs111001290; rs41586446; rs110002182

2

117668432

118739748

1071316

9

rs134103593; rs109545959; rs133621389; rs135143470; rs136343471; rs109908642; rs133815275; rs135205101; rs43320680

3

6388643

6396280

7637

3

rs110787209; rs42458782; rs132773940

4

117852857

118898784

1045927

4

rs133335423; rs43417362; rs133867064; rs136879377

9

72784616

72804256

19640

4

rs41662464; rs109049649; rs41662465; rs136413030

13

78273095

78416778

143683

4

rs41634068; rs137320993; rs109123247; rs41710487

15

28399876

28999494

599618

3

rs134980659; rs41754552; rs110269361

15

31285729

32027462

741733

5

rs135835073; rs29018094; rs110325464; rs43299708; rs43299703

15

50438721

51638163

1199442

14

rs137687321; rs108941833; rs41769292; rs134338365; rs41769258; rs41769237; rs109649273; rs41768429; rs41768423; rs41768414; rs41768364; rs109966062; rs41768379; rs136525289

17

67344705

67375670

30965

3

rs110644998; rs134453171; rs41850009

21#

60154246

60175026

20780

4

rs29018575; rs42236250; rs42236274; rs109897238

22

33753508

34051778

298270

3

rs110064285; rs135018045; rs133223316

  1. Start. End*: candidate region start and end (bp).
  2. #Start and End position referred to Btau4.6.1 assembly.