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Table 4 Details of homology of the DNA sequences identified in this study

From: Genetic diversity analysis in a set of Caricaceae accessions using resistance gene analogues

Marker N N1 GenBank Acc. No. Genotype name of the GenBank accession L BLAST homology searches (Megablast) Q Conserved domain homology searches
Homology E-value Homology E- value
BDTG 11 41 31 Not assigned Not applicable Average length 215bp Oryza sativa Indica Group cultivar IRGC 16339 xa5 gene, partial cds 4e-56 80% Not found Not applicable
BDTG 12 41 31 Not assigned Not applicable Average length 456bp Oryza sativa Indica Group cultivar IRGC 27045 xa5 gene 2e-135 80% Not found Not applicable
  10 JM426511.1 Vasconcellea parviflora 189 Oryza nivara cultivar 106133 XA5 (xa5) gene, complete cds 1e-23 47% Not found Not applicable
JM426525 Vasconcellea stipulata 215 5e-19 35% Not found Not applicable
JM426506 Vasconcellea quercifolia 123 4e-29 77% Gamma subunit of transcription initiation factor IIA 1.54e-04
JM426460 CO5 123 1e-17 73% Gamma subunit of transcription initiation factor IIA 6.11e-04
JM426516 Bangalore Dwarf 115 1e-16 80% Not found Not applicable
JM426495 Pusa Nanha 573 Carica papaya BAC clone 90D06, complete sequence mRNA 2e-24 17% Cytochrome P450 3.08e-24
HR614236 CO 1 1046 Brassica rapa subsp. pekinensis clone KBrH011C10, complete sequence 7e-64 30% Serpentine type 7TM GPCR chemoreceptor Srz 1.74e-04
JM170468 Pusa Giant 281 No significant similarity found Not found Not found Not found Not applicable
JM170470 Vasconcellea pubescens 275 Not found Not found Not found Not applicable
JM170472 Vasconcellea pubescens 555 Pseudomonas pseudoalcaligenes CECT 5344 complete genome 4e-138 70% Methyl-accepting chemotaxis protein (MCP), signaling domain 7.37e-33
BDTG 13 40 34 Not assigned Not applicable Average length 175 Oryza sativa isolate BDTG13-Bhasa receptor kinase (Xa26) gene 1e-16 79% Not found Not applicable
BDTG 13   1 HR614235.1 CO1 108 Carica papaya chloroplast, complete genome 0.080 89% Nickel-dependent hydrogenase 1.74e-16
BDTG14 39 0 Not assigned Not applicable Average length 232bp No significant similarity found Not found Not found Not found Not found
BDTG17 40 31 Not assigned Not applicable Average length 256bp Oryza sativa (japonica cultivar-group) bacterial blight resistance protein XA26 (Xa26) gene, complete cds 3e-162 55% LRR receptor-like protein kinase 1.23e-05
BDTG19 41 0 Not assigned Not applicable Average length 252bp No significant similarity found Not found Not found Not found Not applicable
BDTG21 41 30 Not assigned Not applicable Average length 105bp Oryza sativa Indica Group Xa21 gene for receptor kinase-like protein, complete cds, cultivar:zheda8220 4e-161 76% LRR 6.45e-07
BDTG22 40 37 Not assigned Not applicable Average length 367bp Oryza rufipogon Xa21F pseudogene, strain:W1236 0.0 82% Not found Not applicable
BDTG23 40 31 Not assigned Not applicable Average length 203bp 0.0 80% Not found Not applicable
BDTG24 40 29 Not assigned Not applicable Average length 287bp Oryza rufipogon Xa21F pseudogene, strain:W149 0.0 80% Not found Not applicable
BDTG25 40 35 Not assigned Not applicable Average length 181bp Oryza rufipogon Xa21F pseudogene, strain:W593 0.0 79% Not found Not applicable
BDTG30 40 35 Not assigned Not applicable Average length 254bp Oryza sativa Japonica Group Os11g0559200 (Os11g0559200) mRNA 2e-137 72% LRR receptor-like protein kinase 3.69e-11
BDTG31 41 34 Not assigned Not applicable Average length 362bp 1e-173 65% Not found Not applicable
BDTG34 39 25 Not assigned Not applicable Average length 347bp Oryza longistaminata receptor kinase-like protein gene, family 2e-110 70% Not found Not applicable
  1. N – Total number of sequences obtained.
  2. N1 – Total number of sequences producing significant homology with various sequences of Oryza sativa.
  3. N2 – Total number of sequences allotted accession number by NCBI Genbank.
  4. L – length of the sequence in bp.
  5. Q – percentage of query coverage.