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Table 5 Analysis of multi-species gene families in Rosaceae

From: Extreme expansion of NBS-encoding genes in Rosaceae

Type of gene family Average number of members Number of gene family Number of genes Members of largest family Average nucleotide divergence Ave_ Ka/Ks PAML (* + **|All)
A M Pc Pr S C
APc 1 - 1 - - - 1 2 2 0.341 0.463 -
APcPr 2 - 1 1 - - 1 4 4 0.169 0.660 1|1
AMPcPr 17.8 5.6 5.3 9.2 - - 28 1060 189 0.251 0.525 14|18
AMPcPrS 11.1 5.9 6.3 6.1 3 - 14 453 119 0.269 0.396 7|10
APcPrS 1 - 1 1 1 - 1 4 4 0.157 0.216 0|1
AMPc 1.5 1 1 - - - 2 7 4 0.197 0.481 1|2
APr 8.1 - - 3.5 - - 37 427 131 0.150 0.649 20|26
AMPr 1.7 1.3 - 1.7 - - 3 14 6 0.167 0.374 1|3
APrS 49 - - 45 5 - 1 99 99 0.534 0.577 -
PcPr - - 1 1 - - 1 2 2 0.238 0.534 -
MPcPr - 5 3.5 1 - - 2 19 12 0.310 0.529 1|2
MPc - 2.4 2.5 - - - 48 235 36 0.109 0.637 19|20
MPcS - 2 1.7 - 1 - 3 14 6 0.234 0.499 1|3
MPr - 1 - 1 - - 1 2 2 0.228 0.374 -
AMPcPrSC 1 1 1 1 1 1 1 6 6 0.207 0.091 0|1
MPcSC - 1 1 - 1 1 1 4 4 0.225 0.199 0|1
  1. A: Apple; M: Mei; Pc: Peach; Pr: Pear; S: Strawberry; C: Cannabis.
  2. *P < 0.01; **P <0.05.