Rare intronic variants of TCF7L2 arising by selective sweeps in an indigenous population from Mexico

Acosta, Jose Luis; Hernández-Mondragón, Alma Cristal; Correa-Acosta, Laura Carolina; Cazañas-Padilla, Sandra Nathaly; Chávez-Florencio, Berenice; Ramírez-Vega, Elvia Yamilet; Monge-Cázares, Tulia; Aguilar-Salinas, Carlos A.; Tusié-Luna, Teresa; del Bosque-Plata, Laura

doi:10.1186/s12863-016-0372-7

BMC Genomic Data

Table 2 Novel mutations identified in the Indigenous population

From: Rare intronic variants of TCF7L2 arising by selective sweeps in an indigenous population from Mexico

Indigenous population
Variant Exonic/Intronic	Gene	Gene coordenate	dbSNP138	Chr	Start	End	Ref	Obs
Intronic 4	TCF7L2	14402		Chr10	114724410	114724410	T	A
Intronic 4	TCF7L2	14404		Chr10	114724412	114724412	G	C
Intronic 6	TCF7L2	191411		Chr10	114901419	114901419	A	T
Intronic 6	TCF7L2	191412		Chr10	114901420	114901420	T	G
Intronic 6	TCF7L2	193490		Chr10	114903498	114903498	A	C
Intronic 6	TCF7L2	193491		Chr10	114903499	114903499	C	A
Intronic 7	TCF7L2	193908		Chr10	114903916	114903916	C	A
Intronic 7	TCF7L2	193913		Chr10	114903921	114903921	T	A
Intronic 7	TCF7L2	193940		Chr10	114903948	114903948	G	C
Intronic 7	TCF7L2	193951		Chr10	114903959	114903959	G	T
Intronic 7	TCF7L2	193967		Chr10	114903975	114903975	G	A
Intronic 7	TCF7L2	193975		Chr10	114903983	114903983	G	T
Intronic 7	TCF7L2	193982		Chr10	114903990	114903990	C	A
Intronic 7	TCF7L2	193987		Chr10	114903995	114903995	G	C
Intronic 7	TCF7L2	193988		Chr10	114903996	114903996	C	A
Intronic 7	TCF7L2	193995		Chr10	114904003	114904003	G	C
Intronic 7	TCF7L2	194007		Chr10	114904015	114904015	T	A
Intronic 7	TCF7L2	194012		Chr10	114904020	114904020	G	T
Intronic 7	TCF7L2	195524		Chr10	114905532	114905532	C	G
Intronic 11	TCF7L2	207481		Chr10	114917489	114917489	G	C
Intronic 11	TCF7L2	207483		Chr10	114917491	114917491	T	A
Intronic 11	TCF7L2	207485		Chr10	114917493	114917493	T	C
Intronic 11	TCF7L2	207486		Chr10	114917494	114917494	G	A
Intronic 11	TCF7L2	207487		Chr10	114917495	114917495	G	A
Intronic 11	TCF7L2	207488		Chr10	114917496	114917496	G	C
Intronic 11	TCF7L2	207492		Chr10	114917500	114917500	G	T
Intronic 11	TCF7L2	207495		Chr10	114917503	114917503	T	G
Intronic 11	TCF7L2	207497		Chr10	114917505	114917505	G	C
Intronic 11	TCF7L2	207499		Chr10	114917507	114917507	C	A
Intronic 11	TCF7L2	207500		Chr10	114917508	114917508	A	T
Intronic 11	TCF7L2	207501		Chr10	114917509	114917509	A	G
Intronic 11	TCF7L2	207502		Chr10	114917510	114917510	T	A
Intronic 11	TCF7L2	207504		Chr10	114917512	114917512	G	A
Intronic 13	TCF7L2	209536		Chr10	114919544	114919544	A	T
Intronic 13	TCF7L2	209555		Chr10	114919563	114919563	T	A
Intronic 13	TCF7L2	209562		Chr10	114919570	114919570	C	T
Intronic 13	TCF7L2	209571		Chr10	114919579	114919579	A	G
Intronic 15	TCF7L2	215224		Chr10	114925232	114925232	A	T
Intronic 15	TCF7L2	215229		Chr10	114925237	114925237	G	T
Intronic 15	TCF7L2	215230		Chr10	114925238	114925238	G	C

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