Fig. 4

Genetic linkage maps with integration of phytochrome and HY5-specific CAPS and dCAPS markers. a PHYA1 CAPS, A-subgenome chromosome 11, b PHYB dCAPS, A-subgenome chromosome 10, and c Gh_HY5 dCAPS, D-subgenome chromosome 24. QTL designations on the map are follows as: InL - internode length; MsD - main stem diameter; LP - lint percent; GT - gin turnout; SI - seed index; LI - lint index; Ns - nep size; Nn - number of neps; SCN - number of seed coats; UQL - upper quartile of fiber length by weight; SFC - short fiber content by weight g; ALFw - average length of all fiber by weight; 5.0 L - fiber span length; 2.5 L - fiber span length; VFM – visible foreign matter in percentage; FTX - fiber fineness; IFC - immature fiber content by weight g; MR - maturity ratio; MT - mean tenacity; and ME - mean elongation