Skip to main content

Table 5 Results of analysis of variance of the DGV validation accuracies for the SCE1 scenariosa, b, c

From: Genomic predictions for economically important traits in Brazilian Braford and Hereford beef cattle using true and imputed genotypes

Trait

Paneld

Scenarioe

8–15

8–50

15–50

10–60

20–60

30–60

40–60

50–60

WGBW

* (8)

ns

ns

* (60)

* (20)

* (30)

* (40)

* (50)

WGWY

ns

ns

ns

* (60)

* (60)

* (60)

* (60)

ns

CW

ns

* (50)

ns

* (60)

* (60)

ns

* (40)

* (50)

CY

* (15)

* (50)

ns

* (10)

* (20)

* (30)

* (40)

* (50)

PW

ns

ns

ns

* (60)

* (60)

* (60)

ns

* (50)

PY

ns

ns

ns

* (60)

* (60)

* (60)

* (60)

* (50)

MW

ns

ns

* (15)

* (60)

* (60)

* (60)

* (60)

* (50)

MY

ns

ns

ns

ns

ns

* (60)

ns

* (50)

SCa

* (15)

ns

ns

* (10)

* (20)

* (30)

* (40)

ns

SCaw

* (15)

* (50)

* (50)

* (10)

* (20)

* (30)

* (40)

* (60)

BW

ns

* (8)

* (15)

* (60)

ns

* (30)

* (60)

* (60)

BA

* (15)

ns

* (15)

* (60)

ns

* (60)

* (60)

ns

SW

* (8)

* (8)

ns

* (60)

* (60)

* (60)

* (60)

* (60)

SY

ns

ns

ns

* (60)

* (60)

* (60)

* (60)

* (60)

NW

ns

ns

ns

* (60)

* (60)

* (60)

* (60)

* (60)

NY

ns

ns

ns

* (60)

* (60)

* (60)

* (60)

* (60)

HW

* (15)

* (50)

* (50)

* (10)

* (20)

* (30)

ns

ns

HY

* (15)

* (50)

* (50)

* (60)

* (60)

* (60)

* (60)

ns

TR

ns

* (50)

* (50)

* (10)

* (20)

* (30)

ns

* (60)

OP

* (15)

* (50)

* (50)

* (10)

* (20)

* (30)

* (40)

* (50)

  1. a DGV validation accuracy means Pearson’s correlation between DGVs and EBVs in the validation population; b SCE1 scenario that the number of animals and the percentage of animals with imputed genotypes in the training population varied; c “*” means that there was a significant difference (P < 0.05). The value between brackets indicates which panel/scenario had higher estimated accuracy. “ns” means that there was no significant difference (P > 0.05); d 8,15 and 50 means the 8 K, 15 K and 50 K SNP panel. 8–15, 8–50 and 15–50 are the contrast between the two panels; e 10,20,30,40,50 and 60 means the percentage of imputed genotypes. 10–60, 20–60, 30–60, 40–60, 50–60 are the contrasts between the two percentages of the imputed genotypes