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Table 2 QTLs detected for 21 seedling characteristics under hydroponic culture conditions in the DH populations identified using inclusive composite interval mapping

From: Detection of QTLs for seedling characteristics in barley (Hordeum vulgare L.) grown under hydroponic culture condition

Traitsa Stagesb QTLs Chr.c Pos.d Left Markere Right Markere LOD PVEf Addg
LAG S1 qLAG7–101 7 74 7_489795725 7HL_25508816 23.14 73.86 −0.11
S1 qLAG7–187 7 116 5_496886371 M_254133_378 13.13 31.58 0.07
S1 qLAG7–370 7 209 7_31360519 7_28180957 3.08 6.03 −0.03
S2 qLAG2–228 2 162 2HL_18227895 2_579576154 10.31 26.1 0.13
S2 qLAG7–80 7 66 7HL_37199773 7HL_4313756 5.26 12.51 −0.09
S3 qLAG2–228 2 162 2HL_18227895 2_579576154 8.81 26.84 0.21
S4 qLAG2–206 2 132 2_531230596 2HL_43143355 9.39 27.70 0.30
S4 qLAG5–219 5 193 M_148497_192 5_428226858 3.17 8.39 0.15
SH S1 qSH1–56 1 40 1H_10744858 1_258171231 4.53 7.50 −0.88
S1 qSH2–191 2 123 2_514353957 2HL_13648618 10.14 18.61 1.53
S1 qSH3–51 3 32 3HL_15958290 3HL_32354397 7.03 13.49 1.31
S1 qSH3–369 3 212 3_26035945 3_28844640 3.41 5.49 0.75
S1 qSH5–18 5 42 Ebmatc40 M_86861_975 12.54 24.40 1.67
S1 qSH5–153 5 141 5HL_43331862 M_1634918_588 6.13 11.25 −1.12
S1 qSH7–219 7 127 7HS_26227899 7_348795436 5.51 9.17 0.98
S2 qSH2–191 2 123 2_514353957 2HL_13648618 10.54 17.74 1.83
S2 qSH3–44 3 30 3HL_29995337 3_510997641 7.33 11.77 1.47
S3 qSH2–191 2 123 2_514353957 2HL_13648618 9.07 19.06 1.79
S3 qSH3–51 3 32 3HL_15958290 3HL_32354397 5.54 10.92 1.37
S3 qSH7–199 7 121 7HL_22161891 7HS_6744377 8.30 17.43 1.56
S4 qSH2–191 2 123 2_514353957 2HL_13648618 9.55 22.05 2.29
S4 qSH7–184 7 113 M_171247_237 7HL_36983527 10.40 24.90 2.22
MRL S1 qMRL7–27 7 25 7HL_2460896 7HL_27281835 3.69 13.16 0.75
S2 qMRL7–27 7 25 7HL_2460896 7HL_27281835 4.04 12.92 0.88
S3 qMRL2–113 2 70 2HL_18957514 2HL_20952058 4.09 10.58 −1.21
S3 qMRL2–214 2 139 2HL_766321 2_544135082 6.06 16.23 1.54
S3 qMRL3–117 3 80 3HL_39880616 3_440999767 4.58 12.65 −1.27
S4 qMRL2–113 2 70 2HL_18957514 2HL_20952058 3.27 8.08 −1.01
S4 qMRL2–214 2 139 2HL_766321 2_544135082 5.42 13.86 1.36
S4 qMRL3–117 3 80 3HL_39880616 3_440999767 3.28 8.78 −1.02
MRN S1 qMRN2–188 2 119 2_456666117 2_497016140 11.67 31.28 0.58
S2 qMRN3–15 3 10 3HL_8468228 HvM70 3.34 7.71 0.26
S2 qMRN2–199 2 127 2HL_22930005 2HL_17075593 6.25 19.08 0.66
S3 qMRN3–120 3 81 3HL_37773053 3_426808044 3.22 11.53 0.73
SFW S1 qSFW2–202 2 129 2HL_34260490 2_524782265 10.55 25.71 0.05
S1 qSFW7–157 7 98 7HL_39790706 7_431414178 6.03 13.50 0.04
S2 qSFW2–48 2 33 M_1606997_622 2HS_1353446 3.22 7.85 −0.06
S2 qSFW2–191 2 123 2_514353957 2HL_13648618 11.70 32.39 0.12
S3 qSFW2–90 2 59 2HS_30524211 2HS_17957603 3.04 9.30 −0.12
S3 qSFW2–202 2 129 2HL_34260490 2_524782265 8.06 27.06 0.22
S4 qSFW2–90 2 59 2HS_30524211 2HS_17957603 3.64 10.78 −0.22
S4 qSFW2–202 2 129 2HL_34260490 2_524782265 9.26 30.50 0.40
SLFW S4 qSLFW2–202 2 129 2HL_34260490 2_524782265 8.62 28.83 0.29
RFW S4 qRFW2–90 2 59 2HS_30524211 2HS_17957603 3.60 9.81 −0.06
S4 qRFW2–209 2 137 M_165611_94 2_535589467 10.15 32.06 0.11
SLDW S4 qSLDW2–120 2 73 2HL_44835824 2HL_10858514 4.92 13.22 −0.02
S4 qSLDW2–202 2 129 2HL_34260490 2_524782265 8.37 23.62 0.03
S4 qSLDW7–45 7 41 7HL_34924967 M_205503_1634 3.16 8.17 −0.02
RDW S4 qRDW2–130 2 78 2HL_18855931 M_223185_603 3.20 10.58 −0.01
S4 qRDW2–214 2 139 2HL_766321 2_544135082 6.13 20.22 0.01
FILL   qFILL2–243 2 184 2HL_19715945 2_598509820 3.75 5.28 −0.40
  qFILL3–31 3 23 3HL_38531260 3HL_41243504 3.43 5.01 0.41
  qFILL7–154 7 97 7_440111505 7HL_39790713 22.87 48.43 1.21
THLL   qTHLL6–130 6 105 6HL_13081351 6HL_35014660 5.05 7.62 0.82
  qTHLL7–145 7 94 Bmag746 7_318484923 16.28 30.43 1.64
FOLL   qFOLL2–190 2 122 2_496663791 2_514353957 4.91 13.34 1.36
  qFOLL7–237 7 136 7_382544975 7HS_29196961 7.00 22.36 1.64
SELW   qSELW2–202 2 129 2HL_34260490 2_524782265 4.83 16.65 0.03
FILA   qFILA2–202 2 129 2HL_34260490 2_524782265 6.55 12.05 0.47
  qFILA2–238 2 176 2_588885691 2HL_14160939 5.48 9.94 −0.41
  qFILA3–26 3 19 3HL_42780152 3_534961137 3.17 5.56 0.31
  qFILA7–134 7 88 7HL_37824340 7_460649517 14.82 32.17 0.71
SELA   qSELA2–199 2 127 2HL_22930005 2HL_17075593 8.34 16.19 0.93
  qSELA2–243 2 184 2HL_19715945 2_598509820 4.10 7.41 −0.57
  qSELA3–51 3 32 3HL_15958290 3HL_32354397 3.20 5.98 0.56
  qSELA7–142 7 93 7HL_39750192 7HL_10412411 27.07 77.78 1.83
  qSELA7–175 7 108 1H_82374297 7HS_31863896 9.82 19.98 −0.93
THLA   qTHLA7–145 7 94 Bmag746 7_318484923 7.08 23.33 1.37
FOLA   qFOLA2–202 2 129 2HL_34260490 2_524782265 4.13 12.23 1.55
  qFOLA7–184 7 113 M_171247_237 7HL_36983527 5.27 16.75 1.71
  1. aTrait abbreviations refer to Table 6
  2. bS1 to S4 represented 13th, 20th, 27th and 34th day after germination, respectively
  3. cChromosome
  4. dGenetic distance (in centimorgan) of each QTL from the top of the corresponding chromosome
  5. eMarkers in bold indicate the nearest ones linked to putative QTLs
  6. fThe phenotypic variation explained (in %) by each QTL
  7. gAdditive effect, positive values indicate that the alleles from Huadamai 6 increased trait values