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Table 1 Statistics for the Amplicon-seq

From: Refining a major QTL controlling spotted wilt disease resistance in cultivated peanut (Arachis hypogaea L.) and evaluating its contribution to the resistance variations in peanut germplasm

Sample Amplicons (% of total amplicons) Raw Reads Clean Reads(% of raw reads) Alignment to A + B(% of raw reads) Unique aligned to A + B(% of raw reads)
GV 85(19.45%) 2,239,584 2,198,691(98.17%) 2,138,865(95.50%) 1,414,454(63.16%)
FL-113 64(14.65%) 1,968,429 1,936,715(98.39%) 1,886,187(95.82%) 1,175,212(59.70%)
1082/12 m 37(8.50%) 1,577,182 1,542,703(97.81%) 1,472,688(93.37% 894,211(56.70%)
1082/25 m 52(11.90%) 1,530,410 1,498,663(97.93%) 1,417,204(92.60%) 846,556(55.32%)
S Pool 53(12.13%) 1,651,158 1,601,860(97.01%) 1,507,515(91.3%) 949,213(57.49%)
1082/10 m 52(11.90%) 1,802,447 1,762,463(97.78%) 1,670,078(92.66%) 1,035,643(57.46%)
1075/1 m 44(10.07%) 1,766,476 1,749,951(99.06%) 1,661,645(94.07%) 1,030,698(58.35%)
1075/8 m 50(11.44%) 1,981,290 1,961,693(99.01%) 1,857,054(93.73%) 1,153,221(58.21%)
Total 437 14,516,976 14,252,739(98.18%) 13,611,236(93.76%) 8,513,628(58.65%)
  1. S Pool = Pool of DNAs from three phenotypically susceptible plants; A + B = A and B reference genome of Arachis duranensis and Arachis ipaensis from Bertioli et al., 2016