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Table 1 Statistics for the Amplicon-seq

From: Refining a major QTL controlling spotted wilt disease resistance in cultivated peanut (Arachis hypogaea L.) and evaluating its contribution to the resistance variations in peanut germplasm

Sample

Amplicons (% of total amplicons)

Raw Reads

Clean Reads(% of raw reads)

Alignment to A + B(% of raw reads)

Unique aligned to A + B(% of raw reads)

GV

85(19.45%)

2,239,584

2,198,691(98.17%)

2,138,865(95.50%)

1,414,454(63.16%)

FL-113

64(14.65%)

1,968,429

1,936,715(98.39%)

1,886,187(95.82%)

1,175,212(59.70%)

1082/12 m

37(8.50%)

1,577,182

1,542,703(97.81%)

1,472,688(93.37%

894,211(56.70%)

1082/25 m

52(11.90%)

1,530,410

1,498,663(97.93%)

1,417,204(92.60%)

846,556(55.32%)

S Pool

53(12.13%)

1,651,158

1,601,860(97.01%)

1,507,515(91.3%)

949,213(57.49%)

1082/10 m

52(11.90%)

1,802,447

1,762,463(97.78%)

1,670,078(92.66%)

1,035,643(57.46%)

1075/1 m

44(10.07%)

1,766,476

1,749,951(99.06%)

1,661,645(94.07%)

1,030,698(58.35%)

1075/8 m

50(11.44%)

1,981,290

1,961,693(99.01%)

1,857,054(93.73%)

1,153,221(58.21%)

Total

437

14,516,976

14,252,739(98.18%)

13,611,236(93.76%)

8,513,628(58.65%)

  1. S Pool = Pool of DNAs from three phenotypically susceptible plants; A + B = A and B reference genome of Arachis duranensis and Arachis ipaensis from Bertioli et al., 2016
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BMC Genomic Data

ISSN: 2730-6844

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