Table 2 Lead SNPs from genome-wide associated regions for protein yield in Nordic Holstein cattle. Base positions are given as position in UMD 3.1.1 [49]

1

63177947

0.9885

−1.94

12.35

61838881~ 63178271

ENSBTAG00000046854 (near)

intergenic

2

124837669

0.9886

1.59

12.63

124834921~ 124837676

PTPRU

Intron

3

17160521

0.9717

−1.15

8.76

15377852~ 17160986

S100A12 (near)

Upstream

5

93511826

0.8626

−1.37

14.25

93087740~ 93511841

LMO3 (near)

intergenic

5

21792183^a

0.9813

−1.37

10.39

20072875~ 21792190

SNORD107 (near)

intergenic

5

87923795^b

0.9926

1.50

8.97

85996611~ 87924188

ETNK1 (near)

intergenic

6

88477501

0.9962

−2.60

25.98

87154594~ 88477524

SLC4A4

Intron

6

48477272^a

0.7329

1.49

13.59

46907022~ 48477298

ENSBTAG00000045570 (near)

intergenic

6

88749792^b

0.3222

−1.66

12.13

86831016~ 88749854

GC (near)

intergenic

7

41372989

0.9999

−1.54

18.14

41085164~ 41373119

MGAT1 (near)

intergenic

7

72100619^a

0.9077

1.59

13.29

70118741~ 72100721

EBF1 (near)

intergenic

8

93065787

0.8573

1.65

10.07

91065857~ 93066321

GRIN3A

Intron

8

31538155^a

1.0000

1.91

9.62

30388755~ 31538625

LURAP1L (near)

intergenic

9

33267855

0.8655

−1.46

11.96

32627954~ 33267856

SLC35F1 (near)

intergenic

10

93933304

0.8370

−1.36

9.90

92043775~ 93933391

SEL1L

Intron

11

35512708

0.9999

−1.45

11.82

33534073~ 35512724

ENSBTAG00000027786 (near)

intergenic

13

37208792

0.9279

−1.69

10.90

35572625~ 37208843

MKX (near)

intergenic

13

77657858^a

0.9906

1.17

9.52

76677111~ 77908632

PREX1

intron

14

1835440

0.7471

2.84

48.66

1448510~ 1836166

BOP1

Intron

14

67981742^a

0.7652

1.78

11.60

65984180~ 67981772

STK3 (near)

intergenic

16

32262983

0.9290

−1.52

12.79

30519873~ 32263130

SMYD3

Intron

18

57015407

0.9754

2.56

17.71

55015676~ 57015473

POLD1

Intron

18

15272231^a

0.6697

−1.16

9.53

15032157~ 15272234

SNORA11(near)

downstream

19

27522927

0.8500

−1.42

12.55

26422519~ 27522980

RNASEK (near)

downstream

19

61014793^a

0.8505

−1.08

8.65

60995058~ 61014874

KCNJ2 (near)

intergenic

20

69006609

0.9920

−1.29

11.27

68120719~ 69006661

IRX1 (near)

intergenic

20

9282667^a

0.6747

1.71

10.93

7765154~ 9282923

MRPS27

intron

23

10974968

0.9304

−1.18

10.68

9127211~ 10975139

FGD2 (near)

intergenic

25

36403719

1.0000

1.33

10.25

36112575~ 36403849

EPO (near)

intergenic

26

37695494

0.9122

−1.41

14.76

36684176~ 37695588

KIAA1598 (near)

intergenic

27

36304978

0.9834

1.06

8.52

35875452~ 36305040

ANK1

intron

29

17620617

0.9576

1.47

10.37

15650574~ 17620644

NARS2

intron

29

35459126^a

0.9999

1.61

10.11

33464929~ 35459620

NTM

intron