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Fig. 4 | BMC Genetics

Fig. 4

From: Quality control for Illumina 450K methylation data in the absence of iDat files using correlation structure in pedigrees and repeated measures

Fig. 4

Number of discrepancies for CpG-inferred genotype against the correlation of breeding values. The y-axis shows the number of differences between pre- and posttreatment methylation that exceeded 0.25 for 597 SNP-associated CpGs. The x-axis shows the estimated correlation of the individual breeding values between pre- and posttreatment methylation across 1000 randomly chosen CpGs. Each individual corresponds to 1 point. The yellow color indicates 1 person whose reported gender is discrepant from its CpG-inferred gender both pre- and posttreatment. A boxplot of the correlation of breeding values for all individuals is also displayed

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