Skip to main content

Table 4 DArTs linked to leaf rolling (RL) with known sequences, annotated in NCBI

From: Putative candidate genes responsible for leaf rolling in rye (Secale cereale L.)

Marker NCBI annotation
Marker DArT sequence length (bp) Chrom. Description Species Max score Total score Query cover E value Identity Accession
XrPt506905 665 3R subtilisin-like protease SBT2.2 (LOC109761160), mRNA Aegilops tauschii subsp. tauschii 97 97 8% 6.00E-16 95% XM_020319955.1
XrPt507717 678 3R protein LIKE COV 2 (LOC109734806), mRNA Aegilops tauschii subsp. tauschii 279 279 24% 5.00E-71 96% XM_020293989.1
XrPt507473 599 3R Fhb1 region genomic sequence Triticum aestivum cv Sumai 3 60 60 5% 7.00E-05 97% KX907434.1
XrPt401081 XrPt398502 545 3R jasmonate O-methyltransferase-like (LOC109744228), mRNA Aegilops tauschii subsp. tauschii 359 692 86% 5.00E-95 95% XM_020303320.1
XrPt508197 720 5R RGA1-G gene, complete cds Secale cereale 220 358 19% 4.00E-53 96% KT725818.1
XrPt410783 463 5R cancer-related nucleoside-triphosphatase (LOC109750338), mRNA Aegilops tauschii subsp. tauschii 527 624 75% 1.00E-145 94% XM_020309304.1
XrPt401454 218 5R LRR receptor-like serine/threonine-protein kinase FEI 1 (LOC109774869), mRNA Aegilops tauschii subsp. tauschii 57 57 13% 3.00E-04 100% XM_020333663.1
XrPt400297 773 5R serine/threonine-protein kinase AFC1-like (LOC109779169), transcript variant X4, mRNA Aegilops tauschii subsp. tauschii 228 282 19% 2.00E-55 100% XM_020337784.1
XrPt402531 422 5R transcription factor bHLH79-like (LOC109737374), mRNA Aegilops tauschii subsp. tauschii 99 99 13% 1.00E-16 98% XM_020296517.1
XrPt402607 551 7R polyadenylate-binding protein-interacting protein 7-like (LOC109738116), transcript variant X4, mRNA Aegilops tauschii subsp. tauschii 470 470 60% 2.00E-128 93% XM_020297211.1
XrPt401480 561 7R tubby-like F-box protein 12 (LOC109763585), transcript variant X3, mRNA Aegilops tauschii subsp. tauschii 601 601 65% 8.00E-168 96% XM_020322436.1
XrPt390593 451 7R vegetative cell wall protein gp1-like (LOC109748681), transcript variant X4, mRNA Aegilops tauschii subsp. tauschii 57 57 6% 6.00E-04 100% XM_020307705.1
  1. Bolded—markers nearest to the QTL peak