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Table 2 Summary of significant chromosome regions for number mummified (NM) at genomic level in Landrace population

From: A genome wide association study for the number of animals born dead in domestic pigs

Parity SSC Range (Mb) Number Position(bp) Alleles P value Candidate Gene
1 2 51.85–55.30 7 53,226,790 G/C 1.17E-10 OR2T6
1 12 37.88–37.92 2 37,895,292 C/T 9.23E-09  
1 12 45.64–45.68 2 45,662,205 T/C 1.84E-08 TAOK1
2 11 64.1–64.17 2 64,146,608 C/T 1.03E-07 ABCC4
2 X 112.6–112.64 6 112,615,739 C/G 1.51E-08 ZIC3
3 1 141.79–141.83 2 141,813,666 T/A 2.47E-08  
3 1 295.95–295.99 6 295,973,126 G/A 1.59E-08  
3 2 40.27–40.31 2 40,285,249 T/C 2.61E-12 ZDHHC13
3 10 73.77–73.81 4 73,789,449 C/T 1.42E-09  
3 11 1.28–7.13 99 7,114,076 A/G 5.25E-14 HMGB1/CDK8/SAP18/SKA3/MIPEP/SPATA13/ MTMR6/NUP58/ATP8A2
3 X 69.58–69.62 4 69,596,000 G/A 1.41E-07  
  1. Range Range of significant chromosome region, Number Number of SNP involved, Position Position of top SNP, Alleles Alleles of top SNP, Candidate Gene Gene found in the range