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Table 1 SNP markers that explained the greatest additive genetic variance for meat tenderness in Nelore cattle

From: Sliding window haplotype approaches overcome single SNP analysis limitations in identifying genes for meat tenderness in Nelore cattle

SNP marker BTA Position (bp) Allele frequencies (effectsa) Var (kg2) Gene
rs109294639 3 7,384,182 T = 0.094 (− 0.40 ± 0.08) C = 0.906 (0.40 ± 0.08) 0.027 NOS1AP (intron1)
rs134499129 3 7,390,035 A = 0.163 (− 0.51 ± 0.06) G = 0.837 (0.51 ± 0.06) 0.072 NOS1AP (intron1)
rs41595711 3 7,391,544 T = 0.185 (− 0.30 ± 0.06) C = 0.815 (0.30 ± 0.06) 0.027 NOS1AP (intron1)
rs43490295 4 1,008,553 G = 0.120 (− 0.37 ± 0.07) A = 0.880 (0.37 ± 0.07) 0.028
rs137367597 9 1,116,610 C = 0.135 (−0.34 ± 0.07) A = 0.865 (0.34 ± 0.07) 0.028
rs41623448 10 20,486,971 C = 0.064 (−0.73 ± 0.09) T = 0.936 (0.73 ± 0.09) 0.063 near TBCD21
rs136174419 11 50,332,078 A = 0.112 (−0.37 ± 0.07) G = 0.888 (0.37 ± 0.07) 0.028 near SUCLG1
rs42732955 11 50,406,682 A = 0.124 (−0.39 ± 0.07) G = 0.876 (0.39 ± 0.07) 0.032 SUCLG1 (intron1)
  1. SNP single nucleotide polymorphism, BTA Bos taurus autosome, Var SNP marker additive genetic variance
  2. aAllele substitution effects from GEMMA software (kg)