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Table 1 Marker-trait associations for heading time identified in the durum wheat panel

From: Copy number variation of Ppd-B1 is the major determinant of heading time in durum wheat

MarkerChr.Pos. (cM)aPos. (Mbp)bP valuepG-singledpG-jointepG-PpdfEffectFreq.g(SD, WD)
S45404711A145.07526,685,7159.02e-45.881.561.430.760.60 (0.66, 0.57)
S22563432A23.9236,364,2986.51e-420.785.325.22−1.350.45 (0.73, 0.28)
S55796262A25.5635,596,685c3.32e-420.810.850.87−1.800.15 (0.25, 0.10)
S30648002A31.1335,627,7912.04e-44.751.421.48−0.830.20 (0.25, 0.18)
S22523512A33.5835,846,1025.66e-44.330.050.05−0.840.20 (0.23, 0.18)
Ppd-B1 CNV2B   22.64 22.92−2.00 
D39351652B36.3553,704,5323.27e-623.050.010.00−1.860.15 (0.24, 0.10)
S17134662B36.3553,972,3523.31e-524.240.400.39−1.920.17 (0.27, 0.11)
S22798562B37.1556,191,0881.62e-521.720.280.36−1.850.15 (0.25, 0.09)
D10998962B39.5153,406,3764.45e-418.180.440.43−1.890.11 (0.28, 0.01)
S11069582B40.7453,701,1401.45e-624.8426.153.72−1.980.15 (0.26, 0.09)
D127358382B40.7453,067,9832.81e-625.040.240.22−1.850.17 (0.29, 0.10)
S30216102B40.7453,972,3554.24e-523.310.000.00−1.920.16 (0.26, 0.10)
D40042282B40.7456,011,6616.34e-522.760.080.06−1.810.16 (0.26, 0.10)
S13535532B40.7454,098,4411.13e-421.420.050.05−1.840.16 (0.24, 0.11)
D60400392B40.7453,972,3551.98e-421.590.350.30−1.730.16 (0.26, 0.11)
S9861352B40.9954,516,8915.42e-522.860.050.10−1.910.15 (0.26, 0.09)
S11246402B41.8654,468,6101.67e-420.990.130.10−1.870.15 (0.24, 0.10)
S11281992B61.428.21e-415.751.020.92−1.630.15 (0.18, 0.13)
S10128375B29.3382,403,6197.51e-410.663.934.19−1.050.30 (0.48, 0.19)
D40030536B5.1249,777,6286.04e-44.393.573.700.680.74 (0.74, 0.74)
D11278116B34.67620,269,6667.54e-418.773.913.79−1.420.23 (0.44, 0.11)
D10654757B11.817,619,2251.94e-57.220.010.000.760.57 (0.73, 0.46)
S12036787B14.149,823,9141.11e-68.210.070.16−0.870.48 (0.68, 0.40)
D22535807B16.949,998,4283.36e-79.159.479.340.850.54 (0.70, 0.44)
  1. aGenetic map positions as provided by Diversity Arrays Technology
  2. bPhysical position on the durum wheat reference genome Maccaferri et al. [35]
  3. cPhysical position on chromosome 2A (E value 1e-17), alternative position on 2B at 53,691,676 (E value 3e-20)
  4. dProportion of explained genotypic variance of the marker singly
  5. eProportion of explained genotypic variance in a joint fit of all markers in the order of the strength of their association
  6. fProportion of explained genotypic variance in a joint fit of all markers but with Ppd-B1 CNV included and modelled first
  7. gFrequency of the earliness-conferring allele; in brackets the frequency in the spring type (SD) and winter type (WD) durum lines is shown