Skip to main content

Advertisement

Table 4 Percentage nucleotide identity (on the left) and percentage amino acid identity (on the right) between duplicated Hox coding regions in COC, BSB, IDC-F1, IDMC-F1, IDMC-F2, IDC-F2-C, and IDC-F2-M (following the format above)

From: Rapid genomic DNA variation in newly hybridized carp lineages derived from Cyprinus carpio (♀) × Megalobrama amblycephala (♂)

 HoxA4a (%)HoxA9a (%)HoxA2b (%)HoxA11b (%)HoxB1a (%)HoxB4a (%)HoxB1b (%)HoxB5b (%)HoxC4a (%)HoxC6b (%)HoxD4a (%)HoxD10a (%)
IDMC-F1 i: IDMC-F1 ii94.6/98.593.8/97.687.7/P94.3/96.897.9/98.690.9/97.788.4/97.4
: IDMC-F2 i100.0/100.099.8/100.099.6/99.399.7/99.899.6/P99.6/P100.0/100.0100.0/100.099.9/100.099.8/100.0100.0/100.099.5/99.6
: IDMC-F2 ii94.5/98.593.7/97.697.7/98.691.0/97.788.5/97.4
: IDC-F2-C i99.7/99.0100.0/100.099.6/98.999.7/99.899.5/P99.8/P100.0/100.099.8/100.0100.0/100.099.8/100.099.8/99.499.9/100.0
: IDC-F2-C ii94.5/98.580.2/86.993.8/97.994.3/96.898.0/99.091.0/97.788.6/97.4
: IDC-F2-M i99.9/100.0100.0/100.099.7/99.699.8/99.899.6/P99.8/P100.0/100.099.8/100.099.9/100.099.8/100.099.8/100.099.8/100.0
: IDC-F2-M ii94.2/98.593.8/97.994.3/96.497.9/99.090.9/97.288.3/97.0
: COC i99.8/99.099.8/100.099.7/99.699.7/99.599.5/P99.6/P99.5/100.099.9/100.099.9/100.099.1/98.999.7/99.499.2/98.5
: COC ii94.5/98.080.1/88.593.8/97.987.8/P94.1/96.498.0/99.090.9/97.788.3/97.4
: BSB92.3/98.577.2/85.495.1/97.374.2/94.486.3/P85.8/P86.2/91.189.9/97.693.4/91.683.3/97.387.9/95.581.5/97.0
IDMC-F1 ii: IDMC-F2 i94.6/98.593.9/97.687.8/P94.3/96.897.8/98.690.9/97.788.1/97.8
: IDMC-F2 ii99.9/100.099.7/99.399.5/99.099.8/100.099.6/99.2
: IDC-F2-C i94.5/97.593.9/97.387.6/P94.3/96.897.9/98.690.8/97.288.3/97.4
: IDC-F2-C ii99.9/100.099.7/99.699.8/100.099.9/99.599.8/100.099.6/99.2
: IDC-F2-M i94.5/98.594.0/97.987.8/P94.3/96.898.0/98.690.8/97.788.3/97.4
: IDC-F2-M ii99.6/100.099.7/99.699.8/99.699.7/99.599.7/99.499.2/98.9
: COC i94.6/98.593.9/97.987.8/P94.2/96.898.0/98.690.9/97.288.0/96.7
: COC ii99.7/99.599.8/99.699.2/99.199.8/99.699.9/99.599.6/100.099.4/99.2
: BSB92.3/98.095.0/96.985.0/95.990.5/96.893.3/92.186.5/94.481.4/97.0
IDMC-F2 i: IDMC-F2 ii94.5/98.593.7/97.697.8/98.691.0/97.788.2/97.8
: IDC-F2-C i99.7/99.099.8/100.099.7/98.999.7/99.799.8/P99.6/P100.0/100.099.8/100.099.9/100.099.7/100.099.8/99.499.6/99.6
: IDC-F2-C ii94.5/98.580.1/86.993.7/97.994.3/96.897.9/99.091.0/97.788.3/97.8
: IDC-F2-M i99.9/100.099.8/100.099.8/99.699.7/99.7100.0/P99.6/P100.0/100.099.8/100.099.8/100.099.7/100.099.8/100.099.6/99.6
: IDC-F2-M ii94.2/98.593.7/97.994.3/96.497.8/99.090.9/97.287.9/97.4
: COC i99.8/99.0100.0/100.099.7/99.699.7/99.599.8/P99.6/P99.5/100.099.9/100.099.8/100.099.0/98.999.7/99.499.1/98.9
: COC ii94.5/98.080.2/88.593.9/97.987.8/P94.1/96.497.9/99.090.9/97.788.0/97.8
: BSB92.3/98.577.3/85.495.0/97.374.0/94.286.4/P85.9/P86.2/91.189.9/97.693.5/91.683.3/97.387.9/95.581.3/97.4
IDMC-F2 ii: IDC-F2-C i94.4/97.593.7/97.397.7/98.690.9/97.288.4/97.4
: IDC-F2-C ii100.0/100.099.7/99.699.6/99.5100.0/100.099.8/100.0
: IDC-F2-M i94.6/98.593.9/97.997.8/98.690.9/97.788.3/97.4
: IDC-F2-M ii99.7/100.099.7/99.699.8/99.599.8/99.499.4/99.6
: COC i94.5/98.593.7/97.997.8/98.691.0/97.288.0/96.7
: COC ii99.6/99.599.7/99.699.6/99.599.7/100.099.6/100.0
: BSB92.2/98.094.9/96.993.2/92.186.6/94.481.4/97.0
IDC-F2-C i: IDC-F2-C ii94.4/97.580.2/86.993.7/97.694.3/96.898.0/99.090.9/97.288.5/97.4
: IDC-F2-M i99.6/99.0100.0/100.099.8/99.399.9/100.099.8/P99.8/P100.0/100.099.8/100.099.9/100.099.7/100.099.7/99.499.9/100.0
: IDC-F2-M ii94.1/97.593.7/97.694.3/96.497.9/99.090.8/96.688.2/97.0
: COC i99.5/98.099.8/100.099.7/99.399.7/99.799.7/P99.6/P99.5/100.099.7/100.099.9/100.099.1/98.999.6/98.899.2/98.5
: COC ii94.4/97.080.1/88.593.9/97.687.7/P94.1/96.498.0/99.090.8/97.288.3/97.4
: BSB92.0/97.577.2/85.495.0/96.974.2/94.586.3/P85.8/P86.2/91.189.7/97.693.4/91.683.2/97.387.8/94.981.4/97.0
IDC-F2-C ii: IDC-F2-M i94.6/98.580.2/86.993.9/98.394.3/96.898.1/99.090.9/97.788.5/97.4
: IDC-F2-M ii99.7/100.0100.0/100.099.8/99.699.8/100.099.8/99.499.4/99.6
: COC i94.5/98.580.1/86.993.9/98.394.2/96.898.1/99.091.0/97.288.2/96.7
: COC ii99.6/99.599.2/98.499.7/100.099.8/99.6100.0/100.099.7/100.099.6/100.0
: BSB92.2/98.080.3/88.595.0/97.390.5/96.893.3/92.586.6/94.481.4/97.0
IDC-F2-M i: IDC-F2-M ii94.3/98.593.9/98.394.3/96.498.0/99.090.8/97.288.1/97.0
: COC i99.7/99.099.8/100.099.8/100.099.8/99.799.8/P99.6/P99.5/100.099.7/100.0100.0/100.099.0/98.999.6/99.499.2/98.5
: COC ii94.4/98.080.1/88.594.0/98.387.8/P94.1/96.498.1/99.090.8/97.788.2/97.4
: BSB92.2/98.577.2/85.495.1/97.674.2/94.586.4/P85.8/P86.2/91.189.7/97.693.5/91.683.2/97.387.8/95.581.4/97.0
IDC-F2-M ii: COC i94.2/98.593.9/98.394.2/96.498.0/99.090.9/96.687.8/96.3
: COC ii99.4/99.599.7/100.099.6/99.299.8/100.099.6/99.499.4/99.6
: BSB91.9/98.095.0/97.390.5/96.493.3/92.586.5/93.881.3/96.7
COC i: COC ii94.5/98.080.2/88.593.9/98.387.8/P94.0/96.498.1/99.090.9/97.287.9/96.7
: BSB92.3/98.577.3/85.495.1/97.674.2/94.586.4/P86.0/P86.0/91.189.8/97.693.5/91.682.9/96.387.9/94.981.0/96.3
COC ii: BSB92.2/97.580.3/89.095.0/97.385.2/95.990.3/96.493.3/92.586.5/94.481.4/97.0
  1. Notes: Values before slashes (/) denote nucleotide identity, and values after slashes denote amino acid identity; P represents one or two amino acid sequences as pseudogene sequences for which the identity cannot be compared