Characterization of bovine MHC DRB3 diversity in global cattle breeds, with a focus on cattle in Myanmar

BMC Genomic Data

Table 3 Nucleotide diversity (π), mean number of pairwise differences (NPD) and mean number of non-synonymous (d_n) and synonymous (d_s) nucleotide substitutions per site. ABS = antigen-binding site

Breed	π	NPD	Total			ABS
			ds	dn	dn / ds	ds	dn	dn / ds
Pyer Sein^a	0.090	20.96	0.038	0.096	2.53	0.127	0.387	3.05
Shwe Ni^a	0.080	17.89	0.039	0.098	2.51	0.122	0.397	3.25
Holstein-Friesian crossbreed^a	0.080	20.09	0.043	0.099	2.30	0.141	0.4	2.84
Yacumeño ^b	0.078	19.59	0.036	0.099	2.75	0.128	0.391	3.05
Hartón del Valle ^b	0.076	19.00	0.029	0.096	3.31	0.109	0.386	3.54
Bolivian Nellore ^c	0.070	17.54	0.035	0.097	2.77	0.117	0.388	3.32
Bolivian Gir ^c	0.078	19.45	0.038	0.096	2.53	0.133	0.385	2.89
Nellore x Brahman ^c	0.068	16.95	0.039	0.097	2.49	0.128	0.376	2.94
Japanese Holstein ^d	0.079	19.86	0.038	0.096	2.53	0.132	0.393	2.98
Japanese Shorthorn ^d	0.079	19.80	0.041	0.097	2.37	0.128	0.41	3.20
Japanese Jersey ^d	0.073	16.31	0.041	0.099	2.41	0.122	0.402	3.30
Japanese Black ^d	0.071	18.56	0.043	0.096	2.23	0.139	0.365	2.63
Chilean Hereford ^e	0.070	17.41	0.033	0.098	2.97	0.112	0.46	4.11
Chilean Black Angus ^e	0.077	19.17	0.037	0.097	2.62	0.123	0.385	3.13
Chilean Red Angus ^e	0.080	20.03	0.041	0.097	2.37	0.124	0.389	3.14
Philippine Brahman ^f	0.080	20.04	0.04	0.096	2.40	0.133	0.379	2.85
Philippine Native ^f	0.083	19.60	0.036	0.096	2.67	0.12	0.381	3.18

^a Present work; ^b Giovambattista et al., [26]; ^cTakeshima et al., [29]; ^dTakeshima et al., [18]; ^eTakeshima et al., [22, 23]; and ^fTakeshima et al., [21]

ISSN: 2730-6844