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Table 4 Percentage of commonly selected animals between the additive model and models including non-additive genetic effects

From: Investigating the impact of non-additive genetic effects in the estimation of variance components and genomic predictions for heat tolerance and performance traits in crossbred and purebred pig populations

Trait

Modela

1%

5%

10%

20%

T1

MAI

97.14%

96.02%

96.88%

97.73%

MAE

82.86%

86.93%

88.10%

89.09%

MAIE

82.86%

86.36%

87.54%

89.38%

MAD

100.00%

100.00%

100.00%

100.00%

MAID

97.14%

96.02%

96.88%

97.73%

MADE1

82.86%

86.36%

88.10%

89.09%

MAIDE1

82.86%

86.36%

87.25%

89.38%

MADE2

82.86%

86.36%

88.10%

89.09%

MAIDE2

82.86%

86.36%

87.25%

89.38%

MADE3

82.86%

86.36%

88.10%

89.09%

MAIDE3

82.86%

86.36%

87.25%

89.38%

T2

MAI

100.00%

100.00%

100.00%

100.00%

MAE

77.14%

92.05%

91.78%

94.05%

MAIE

77.14%

91.48%

91.78%

94.33%

MAD

97.14%

98.86%

98.58%

99.15%

MAID

97.14%

98.30%

98.30%

99.15%

MADE1

80.00%

92.05%

91.50%

94.05%

MAIDE1

77.14%

92.05%

91.50%

94.05%

MADE2

80.00%

92.05%

91.50%

94.05%

MAIDE2

77.14%

92.05%

91.50%

94.05%

MADE3

80.00%

92.05%

91.50%

94.05%

MAIDE3

77.14%

92.05%

91.50%

94.05%

T3

MAI

94.29%

97.73%

98.30%

98.30%

MAE

71.43%

76.14%

79.32%

84.56%

MAIE

71.43%

77.27%

78.47%

84.70%

MAD

94.29%

99.43%

98.87%

99.15%

MAID

94.29%

97.73%

97.73%

98.16%

MADE1

71.43%

76.14%

79.32%

84.56%

MAIDE1

71.43%

77.27%

78.47%

84.70%

MADE2

71.43%

76.70%

81.59%

86.54%

MAIDE2

71.43%

78.41%

80.45%

86.40%

MADE3

68.57%

77.84%

81.87%

87.11%

MAIDE3b

-

-

-

-

T4

MAI

100.00%

100.00%

99.72%

99.72%

MAE

94.29%

97.73%

96.60%

97.45%

MAIE

94.29%

97.73%

96.60%

97.59%

MAD

100.00%

98.86%

99.43%

99.43%

MAID

100.00%

98.86%

99.15%

99.58%

MADE1

97.14%

97.73%

96.60%

97.45%

MAIDE1

97.14%

97.73%

96.60%

97.59%

MADE2

97.14%

97.73%

96.60%

97.45%

MAIDE2

97.14%

97.73%

96.60%

97.59%

MADE3

97.14%

97.73%

96.60%

97.45%

MAIDE3

97.14%

97.73%

96.60%

97.59%

T5

MAI

100.00%

96.02%

96.32%

98.16%

MAE

88.57%

95.45%

95.18%

96.03%

MAIE

88.57%

94.32%

94.05%

95.61%

MAD

94.29%

96.59%

96.88%

97.45%

MAID

94.29%

96.59%

96.32%

97.45%

MADE1

91.43%

94.32%

95.75%

96.03%

MAIDE1

88.57%

95.45%

94.62%

95.61%

MADE2

91.43%

94.32%

95.75%

96.03%

MAIDE2

88.57%

95.45%

94.62%

95.61%

MADE3

91.43%

94.32%

95.75%

96.03%

MAIDE3

88.57%

95.45%

94.62%

95.61%

  1. aMA: \(\textbf{y}=\textbf{X}\varvec{\upbeta }+\textbf{Za}+\varvec{\upepsilon }\) ; MAI: \(\textbf{y}=\textbf{X}\varvec{\upbeta }+\textbf{fb}+\textbf{Za}+\varvec{\upepsilon }\); MAE: \(\textbf{y}=\textbf{X}\varvec{\upbeta }+\textbf{Za}+\textbf{Z}{\varvec{e}}_{\textbf{aa}}+\varvec{\upepsilon }\); MAIE: \(\textbf{y}=\textbf{X}\varvec{\upbeta }+\textbf{fb}+\textbf{Za}+\textbf{Z}{\varvec{e}}_{\textbf{aa}}+\varvec{\upepsilon }\); MAD: \(\textbf{y}=\textbf{X}\varvec{\upbeta }+\textbf{Za}+\textbf{Zd}+\varvec{\upepsilon }\); MAID: \(\textbf{y}=\textbf{X}\varvec{\upbeta }+\textbf{fb}+\textbf{Za}+\textbf{Zd}+\varvec{\upepsilon }\); MADE1: \(\textbf{y}=\textbf{X}\varvec{\upbeta }+\textbf{Za}+\textbf{Zd}+\textbf{Z}{\varvec{e}}_{\textbf{aa}}+\varvec{\upepsilon }\); MAIDE1: \(\textbf{y}=\textbf{X}\varvec{\upbeta }+\textbf{fb}+\textbf{Za}+\textbf{Zd}+\textbf{Z}{\varvec{e}}_{\textbf{aa}}+\varvec{\upepsilon }\); MADE2: \(\textbf{y}=\textbf{X}\varvec{\upbeta }+\textbf{Za}+\textbf{Zd}+\textbf{Z}{\varvec{e}}_{\textbf{aa}}+\textbf{Z}{\varvec{e}}_{\textbf{ad}}+\varvec{\upepsilon }\); MAIDE2: \(\textbf{y}=\textbf{X}\varvec{\upbeta }+\textbf{fb}+\textbf{Za}+\textbf{Zd}+\textbf{Z}{\varvec{e}}_{\textbf{aa}}+\textbf{Z}{\varvec{e}}_{\textbf{ad}}+\varvec{\upepsilon }\); MADE3: \(\textbf{y}=\textbf{X}\varvec{\upbeta }+\textbf{Za}+\textbf{Zd}+\textbf{Z}{\varvec{e}}_{\textbf{aa}}+\textbf{Z}{\varvec{e}}_{\textbf{ad}}+\textbf{Z}{\varvec{e}}_{\textbf{dd}}+\varvec{\upepsilon }\); MAIDE3:\(\textbf{y}=\textbf{X}\varvec{\upbeta }+\textbf{fb}+\textbf{Za}+\textbf{Zd}+\textbf{Z}{\varvec{e}}_{\textbf{aa}}+\textbf{Z}{\varvec{e}}_{\textbf{ad}}+\textbf{Z}{\varvec{e}}_{\textbf{dd}}+\varvec{\upepsilon }\)
  2. bModel MAIDE3 did not converge for T3.