Table 3 RSCU of genes and the optimal codons of the mitogenome in H. citrina

Ala (A)

GCA^a

1.14

0.84

0.31

Pro (P)

CCA

0.84

1.33

-0.49

GCC^a

1.43

0.84

0.59

CCC

0.95

1.00

-0.05

GCG

0

0.47

-0.47

CCG

0.95

0.83

0.11

GCU

1.43

1.86

-0.43

CCU^a

1.26

0.83

0.43

Cys (C)

UGC

0

0.71

-0.71

Gln (Q)

CAA^a

1.63

1.50

0.13

UGU^a

2.00

1.29

0.71

CAG

0.38

0.50

-0.13

Asp (D)

GAC

0.44

0.90

-0.46

Arg (R)

AGA

0.60

1.35

-0.75

GAU^a

1.56

1.10

0.46

AGG

0.60

1.01

-0.41

Glu (E)

GAA^a

1.68

1.44

0.24

CGA^a

1.60

1.08

0.52

GAG

0.32

0.56

-0.24

CGC

0.40

0.94

-0.54

Phe (F)

UUC

0.48

0.97

-0.48

CGG

1.00

0.74

0.26

UUU^a

1.52

1.03

0.48

CGU^a

1.80

0.88

0.92

Gly (G)

GGA^a

1.48

1.08

0.40

Ser (S)

AGC

0.35

0.59

-0.24

GGC

0.15

0.61

-0.46

AGU

1.06

1.12

-0.06

GGG

0.30

1.22

-0.92

UCA

0.94

0.99

-0.05

GGU^a

2.07

1.08

0.99

UCC

1.18

1.12

0.06

His (H)

CAC

0.36

0.63

-0.26

UCG^a

1.29

0.66

0.63

CAU^a

1.64

1.38

0.26

UCU

1.18

1.52

-0.34

Ile (I)

AUA

0.30

1.12

-0.82

Thr (T)

ACA

1.00

1.10

-0.10

AUC

0.98

0.85

0.13

ACC

1.00

1.10

-0.10

AUU^a

1.73

1.04

0.69

ACG

0.60

0.94

-0.34

Lys (K)

AAA^a

1.13

0.95

0.17

ACU^a

1.40

0.86

0.54

AAG

0.88

1.05

-0.17

Val (V)

GUA

0.95

1.17

-0.22

Leu (L)

CUA

0.68

0.83

-0.15

GUC

0.76

1.11

-0.35

CUC

0.41

0.71

-0.30

GUG

0.19

0.92

-0.73

CUG

0.14

0.53

-0.40

GUU^a

2.10

0.80

1.30

CUU^a

1.23

1.13

0.10

Trp (W)

UGG

1.00

1.00

0

UUA^a

2.05

1.60

0.44

Tyr (Y)

UAC

0.13

0.64

-0.51

UUG^a

1.50

1.19

0.31

UAU^a

1.87

1.36

0.51

Asn (N)

AAC

0.89

0.54

0.35

Met (M)

AUG

1.00

1.00

0

AAU

1.11

1.46

-0.35