Table 1 Thirteen candidate SNPs associated with beef marbling detected using genome-resequencing on BTA7
Position | SNP ID | Gene | SNP | Amino acid substitution | Genotype | GLM p-value | GLM Bonferroni-adjusted p-value | ||
|---|---|---|---|---|---|---|---|---|---|
AA | AB | BB | |||||||
15,820,556 | rs720528091 | RDH8 | c.451G > A | V151M | 439 | 87 | 3 | 6.19E-01 | 8.04E + 00 |
15,820,574 | rs136794063 | RDH8 | c.469G > T | A157S | 229 | 253 | 47 | 3.96E-02 | 5.15E-01 |
15,884,198 | rs208565993 | ANGPTL6 | c.368C > T | A123V | 349 | 160 | 20 | 1.15E-02 | 1.49E-01 |
15,884,496 | rs378436650 | ANGPTL6 | c.70G > A | A24T | 250 | 224 | 55 | 1.73E-01 | 2.25E + 00 |
15,934,431 | rs210537571 | DNMT1 | c.1030 T > A | S344T | 390 | 130 | 9 | 4.08E-01 | 5.31E + 00 |
15,998,765 | rs209256672 | MRPL4 | c.136C > A | P46T | 434 | 93 | 2 | 2.85E-01 | 3.70E + 00 |
16,048,450 | rs207869084 | ICAM1 | c.470C > G | A157G | 172 | 290 | 67 | 3.45E-04 | 4.48E-03 |
16,049,219 | rs209971703 | ICAM1 | c.872G > C | S291T | 311 | 198 | 20 | 1.13E-02 | 1.47E-01 |
16,049,421 | rs110207241 | ICAM1 | c.994G > A | A332T | 179 | 297 | 53 | 3.33E-04 | 4.33E-03 |
16,049,750 | rs800810449 | ICAM1 | c.1193A > G | Q398R | 471 | 58 | 0 | 9.39E-01 | 1.22E + 01 |
16,057,414 | rs209660548 | ICAM5 | c.1065G > C | E355D | 179 | 281 | 69 | 5.28E-04 | 6.86E-03 |
16,088,911 | rs110709663 | ICAM3 | c.739G > A | D247N | 200 | 254 | 75 | 1.18E-04 | 1.54E-03 |
16,089,483 | rs110165710 | ICAM3 | c.494A > G | Q165R | 204 | 258 | 67 | 4.73E-04 | 6.15E-03 |