Table 2 Gene classification in the chloroplast genome of Rhus genus
Category of genes (No.) | Group (No.) | Name of gene (No. of duplicated gene) |
|---|---|---|
Self replication (74) | rRNA (8) | rrn4.5(2),rrn5(2),rrn16(2),rrn23(2) |
tRNA (37) | trnH-GUG,trnK-UUU,trnQ-UUG,trnS-GCU,trnG-UCC,trnR-UCU,trnC-GCA,trnD-GUC,trnY-GUA,trnE-UUC,trnT-GGU,trnS-UGA,trnG-UCC,trnfM-CAU,trnS-GGA,trnT-UGU,trnL-UAA,trnF-GAA,trnV-UAG,trnM-CAU,trnW-CCA,trnP-UGG,trnI-CAU(2),trnL-CAA(2),trnV-GAC(2),trnI-GAU(2),trnA-UGC(2),trnR-ACG(2),trnN-GUU(2),trnL-UAG | |
Small subunit of ribosome (14) | rps16*,rps2,rps14,rps4,rps18,rps12(2)*,rps11,rps8,rps3,rps19,rps7(2),rps15 | |
Large subunit of ribosome (11) | rpl33,rpl20,rpl36,rpl14,rpl16*,rpl22,rpl2(2)*,rpl23(2),rpl32 | |
DNA dependent RNA polymerase (4) | rpoC2,rpoC1*,rpoB,rpoA | |
Genes for photosynthesis (46) | Subunits of photosystem I (5) | psaB,psaA,psaI,psaJ,psaC |
Subunits of photosystem II (15) | psbA,psbK,psbI,psbM,psbD,psbC,pzbZ,psbJ,psbL,psbF,psbB,psbT,psbN,psbH,psbE | |
Subunits of cytochrome b/f complex (6) | petD*,petB*,petG,petL,petA,petN | |
Subunits of ATP synthase (6) | atpA,atpF*,atpH,atpI,atpE,atpB | |
Subunits of NADH synthase (12) | ndhJ,ndhK,ndhC,ndhB(2)*,ndhF,ndhD,ndhE,ndhG,ndhI,ndhA*,ndhH | |
Subunits of rubisco (1) | rbcL | |
Subunits P (1) | clpP** | |
Other genes (5) | Mature (1) | matK |
Envelop membrance protein (1) | cemA | |
Subunit of acetyl-CoA carboxylase (1) | accD | |
C-type cytochrome synthesis (1) | ccsA | |
Translational initiation factor (1) | infA | |
Genes of unknown function (10) | Conserved open reading frames (10) | ycf1(2),ycf2(2),ycf3**,ycf4,ycf15(2),ycf68(2) |