Table 3 Variation of complete chloroplast genomes, potential molecular markers and universal barcodes
Regions | Length | Variable sites | Parsimony information sites | Nucleotide diversity | ||
|---|---|---|---|---|---|---|
numbers | % | numbers | % | |||
Two R. glabra genomes | 160,022 | 23 | 0.0144 | 0 | 0 | 0.00014 |
Three R. typhina genomes | 161,410 | 430 | 0.2664 | 0 | 0 | 0.00181 |
trnH-psbA* | 613 | 43 | 7.0147 | 16 | 2.6101 | 0.03109 |
trnK-rps16* | 1177 | 36 | 3.0586 | 29 | 2.4639 | 0.01789 |
ycf4-cemA** | 982 | 66 | 6.7210 | 29 | 2.9532 | 0.03528 |
ndhF-rpl32-trnL** | 2849 | 153 | 5.3703 | 127 | 4.4577 | 0.03399 |
ccsA-ndhD** | 419 | 29 | 6.9212 | 23 | 5.4893 | 0.03819 |
rps19* | 322 | 1 | 0.3106 | 0 | 0 | 0.00181 |
trnS-psbZ* | 375 | 4 | 1.0667 | 4 | 1.0667 | 0.00573 |
trnC-D* | 2772 | 65 | 2.3449 | 51 | 1.8398 | 0.01126 |
trnL-F* | 370 | 13 | 3.5135 | 9 | 2.4324 | 0.01547 |