Table 2 Proteins modelled using Phyre2 and percentage composition of essential amino acids
Protein name | Template | PDB header/ fold | Essential amino acid composition (%) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
His | Ile | Leu | Lys | Met | Phe | Thr | Trp | Val | |||
CsFT | c2obkE | structural genomics | 1.0 | 2.9 | 5.3 | 15.0 | 1.9 | 2.4 | 4.8 | 0.0 | 10.1 |
CsCO | c6fcxA | oxidoreductase | 2.7 | 8.0 | 8.5 | 6.6 | 3.4 | 4.6 | 5.7 | 1.4 | 5.9 |
CaSOC1 | c5oikZ | Transcription | 2.0 | 5.4 | 6.3 | 6.0 | 2.9 | 2.4 | 4.5 | 0.8 | 8.5 |
CsFLD | c2xagA | Transcription | 2.1 | 4.2 | 11.4 | 6.9 | 2.5 | 4.2 | 4.4 | 1.0 | 7.2 |
CsLFY | c2vy2A | Transcription | 2.8 | 3.0 | 8.3 | 5.8 | 1.5 | 3.0 | 2.8 | 1.5 | 6.8 |
CsSVP | d1n6ja | SRF-like | 1.8 | 5.5 | 11.5 | 8.8 | 2.3 | 2.3 | 2.3 | 1.8 | 5.1 |
CsTFL | d1qoua | Ribosome | 2.9 | 5.2 | 5.8 | 2.3 | 2.9 | 6.4 | 7.5 | 0.6 | 9.8 |
CsBFT | d1qoua | PEBP-like | 2.9 | 5.8 | 4.6 | 3.5 | 3.5 | 4.6 | 6.9 | 0.6 | 10.4 |
CsMADS_AGL61 | c6yvuB | cell cycle | 3.5 | 4.8 | 8.3 | 9.2 | 1.2 | 2.5 | 4.2 | 1.2 | 5.3 |
CsMADS_AGL82 | c4m57A | rna binding protein | 1.2 | 6.2 | 11.1 | 8.7 | 4.3 | 2.1 | 4.3 | 1.4 | 5.6 |
CsMADS_AGL31 | c1h28B | cell cycle/ transferase substrate | 1.9 | 6.7 | 8.1 | 6.7 | 3.9 | 5.2 | 2.9 | 1.0 | 7.5 |
CsMADS_AGL3 | c4ox0D | Transcription | 3.4 | 3.4 | 13.1 | 4.6 | 2.3 | 2.3 | 5.1 | 1.1 | 5.7 |
CsMADS_AGL70 | c3cblA | Transferase | 2.7 | 6.5 | 10.7 | 7.6 | 2.0 | 4.5 | 4.3 | 1.1 | 7.2 |
CsMADS_AGL72 | c7nb0A | plant protein | 0.0 | 7.1 | 5.9 | 10.6 | 3.5 | 8.2 | 4.7 | 0.0 | 7.1 |
CsMADS_AGL35 | d1n6ja | SRF-like | 1.3 | 3.8 | 9.3 | 11.0 | 5.9 | 3.8 | 3.8 | 1.7 | 4.2 |
CsTSF | c5mmi6 | Ribosome | 3.4 | 4.8 | 11.0 | 13.7 | 5.5 | 3.4 | 1.4 | 0.7 | 4.1 |
CsAP3 | d1mnma | SRF-like | 2.7 | 4.5 | 9.0 | 9.4 | 3.6 | 3.1 | 7.6 | 0.4 | 4.0 |
CsAP2 | c7et4G | dna binding protein/dna | 1.8 | 2.5 | 5.7 | 4.5 | 1.8 | 4.5 | 5.5 | 1.4 | 5.5 |
CsWUS | c6wigA | plant protein/dna | 5.3 | 3.4 | 8.7 | 6.7 | 5.3 | 3.4 | 6.2 | 1.9 | 3.4 |
CsCRY1 | c1u3cA | signaling protein | 2.4 | 3.8 | 8.2 | 2.8 | 1.8 | 4.0 | 4.4 | 3.2 | 5.8 |
CsCRY2 | c6k8kA | signaling protein | 2.4 | 4.0 | 10.4 | 5.3 | 1.9 | 4.0 | 3.9 | 3.7 | 5.1 |
CsDL4 | c7eldA | Hydrolase | 2.8 | 5.9 | 11.8 | 6.7 | 1.8 | 4.8 | 3.4 | 0.7 | 6.1 |
CsGI | c7wa4A | circadian clock protein | 3.3 | 5.8 | 11.2 | 3.9 | 1.6 | 3.2 | 4.0 | 1.7 | 5.4 |
CsPHYB | c7rzwA | gene regulation | 3.1 | 6.1 | 10.1 | 5.0 | 2.4 | 3.8 | 5.1 | 0.9 | 7.9 |
CsFLK | c2anrA | rna-binding protein/rna | 2.9 | 5.0 | 4.6 | 3.5 | 3.3 | 1.3 | 3.8 | 0.6 | 8.8 |
CsSEP2 | c7nb0A | plant protein | 1.2 | 3.7 | 14.0 | 7.4 | 2.1 | 2.5 | 5.3 | 0.8 | 3.3 |
CsPI | c7nb0A | plant protein | 2.5 | 7.1 | 11.8 | 8.4 | 2.1 | 4.2 | 5.0 | 0.4 | 5.0 |
CsMAF1 | d1ijdA | Light-harvesting complex subunits | 0.9 | 5.4 | 11.7 | 5.9 | 1.4 | 5.4 | 7.2 | 1.8 | 6.8 |
CsSHP1 | d1n6jA | SRF-like | 0.0 | 6.3 | 11.0 | 11.0 | 1.6 | 2.4 | 4.7 | 0.8 | 3.1 |
CsCEN | d1qouA | PEBP-like | 2.3 | 4.7 | 5.8 | 4.7 | 3.5 | 7.0 | 7.0 | 0.6 | 10.5 |
CsFLC | c7nb0A | Plant protein | 1.0 | 4.5 | 15.0 | 7.5 | 2.0 | 2.5 | 5.0 | 0.5 | 4.5 |
CsEMF1 | c4mc5C | Viral protein | 4.0 | 4.3 | 6.9 | 7.7 | 2.5 | 3.5 | 5.1 | 0.8 | 4.2 |
CsFRI | c5ch6B | Transcription | 2.6 | 6.6 | 8.1 | 8.3 | 2.4 | 3.6 | 4.4 | 1.0 | 6.3 |
CsTEM1 | d1widA | DNA-binding pseudobarrel domain | 1.9 | 4.2 | 6.6 | 8.0 | 2.7 | 3.7 | 4.5 | 1.6 | 6.6 |
CsSPB | d1ul4A | SBT domain | 3.2 | 2.1 | 5.3 | 11.6 | 2.1 | 2.6 | 3.2 | 0.0 | 4.8 |
CsSPL1 | d1ul4A | SBT domain | 2.7 | 3.9 | 10.1 | 5.8 | 1.9 | 3.9 | 3.7 | 1.3 | 7.3 |
CsSPL2 | d1ul4A | SBT domain | 2.5 | 2.7 | 7.5 | 6.7 | 2.5 | 3.8 | 5.6 | 1.5 | 4.2 |
CsSUF4 | c6j0daA | Transcription | 3.0 | 3.5 | 4.7 | 5.0 | 3.0 | 4.2 | 4.5 | 1.5 | 10.2 |
CsVIN3 | c6lthO | Gene regulation | 2.2 | 3.2 | 7.3 | 7.3 | 2.6 | 3.8 | 3.1 | 0.8 | 5.1 |
CsVIP3 | c2ymuA | Unknown function | 3.2 | 3.2 | 8.3 | 4.1 | 2.9 | 3.2 | 7.6 | 3.2 | 10.2 |
CsDELLA | c6kpdC | Transcription | 2.7 | 3.7 | 9.3 | 3.9 | 3.2 | 4.4 | 4.7 | 1.2 | 5.7 |
CsZTL | c5svuD | Circadian clock protein | 2.1 | 3.7 | 10.6 | 2.4 | 1.6 | 4.5 | 5.7 | 2.6 | 8.3 |
CsFT3 | c7t7vA | Exocytosis | 3.1 | 6.1 | 10.4 | 6.1 | 2.6 | 4.1 | 5.4 | 2.2 | 8.4 |