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Table 2 Several of the top largest (GCC)2 and (GGC)2 colonies across human genome

From: Dyads of GGC and GCC form hotspot colonies that coincide with the evolution of human and other great apes

Colony Formula

Chr. No

Location

Transcript ID

Biotype

[(GCC)2]219

2

Intergenica (14 kb downstream of COPS7B)

ENST00000350033.8

 

[(GCC)2]99

20

Intergenic (5 kb downstream of CDH4)

ENST00000611855.4

 

[(GGC)2]70 (GCC)2

9

Intergenic (16kb upstream of WDR5)

ENST00000358625.4

 

[(GCC)2]51

16

RAB40C (Intron 1)

ENST00000248139.8

Protein coding

[(GGC)2]41

4

Intergenic (21 kb downstream of TRAPPC11)

ENST00000334690.11

 

[(GGC)2]38 (GCC)2

10

ABCC2 (Intron 25)

ENST00000647814.1

Protein coding

[(GGC)2]38

19

Intergenic (14 kb downstream of CYP2B7P)

ENST00000599198.5

 

[(GCC)2]36

X, Y

IL3RA (Intron 9 pseudo autosomal region)

ENST00000331035.10

Protein coding

[(GGC)2]35

X

KDM6A (Intron 8)

ENST00000611820.5

Protein coding

[(GGC)2]33

4

Intergenic (109 kb downstream of COPS4)

ENST00000264389.7

 

[(GCC)2]32

16

Intergenic (118 kb downstream of SETD1A)

ENST00000262519.14

 

[(GCC)2]30

18

ANKRD20A5P (Intron 15)

ENST00000431648.8

Transcribed unprocessed pseudogene

[(GCC)2]20 (GGC)2

17

Intergenic (160 kb upstream of COPS3)

ENST00000268717.10

 

[(GGC)2]11 [(GCC)2]5

17

KANSL1 (promoter/5′ UTR)

ENST00000262419.10

Protein coding

[(GGC)2]16

Y

TTTY10 (Intron 1)

ENST00000661812.1

lncRNA

[(GCC)2]8 [(GGC)2]8

11

Intergenic (229 kb downstream of MACROD1)

ENST00000255681.7

 

[(GCC)2]11

Y

XGY1 (Intron 6)

ENST00000381172.3

Unprocessed pseudogene

[(GCC)2]6 [(GGC)2]4

3

Intergenic (197kb downstream of WDR82)

ENST00000296490.8

 
  1. aFor the intergenic colonies, the nearest gene to those colonies is annotated