Table 1 Overview of all data files/data sets
From: Draft genome of Brasenia schreberi, a worldwide distributed and endangered aquatic plant
Label | Name of data file/data set | File types (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data file 1 | Raw long whole genome sequencing reads | Fastq file (.fastq) | NCBI Sequence Read Archive, |
Data file 2 | Raw short whole genome sequencing reads | Fastq file (.fastq) | NCBI Sequence Read Archive, |
Data file 3 | Raw RNA reads of leaf tissues | Fastq file (.fastq) | NCBI Sequence Read Archive, |
Data file 4 | Assembled genome | Fasta file (.fasta) | NCBI Nucleotide, |
Data file 5 | BUSCO assessment of the assembly using Eudicots database | Text (.txt) | Figshare, https://doi.org/10.6084/m9.figshare.25036598 [26] |
Data file 6 | BUSCO assessment of the assembly using Embryphyta database | Text (.txt) | Figshare, https://doi.org/10.6084/m9.figshare.25036601 [27] |
Data file 7 | Compleasm assessment of the assembly using Eudicots database | Text (.txt) | Figshare, https://doi.org/10.6084/m9.figshare.25036607 [28] |
Data file 8 | Compleasm assessment of the assembly using Embryphyta database | Text (.txt) | Figshare, https://doi.org/10.6084/m9.figshare.25036613 [29] |
Data file 8 | Repetitive sequences predicted by RED | Text file (.bed) | Figshare, https://doi.org/10.6084/m9.figshare.25092815.v1 [32] |
Data file 9 | Repetitive sequences predicted by EDTA | Gff3 file (.gff3) | Figshare, https://doi.org/10.6084/m9.figshare.25092836.v1 [33] |
Data file 10 | Repetitive sequences combined by RED and EDTA | Text file (.bed) | Figshare, https://doi.org/10.6084/m9.figshare.25092983.v1 [34] |
Data file 11 | Table 1 Species with their protein sequences used for gene prediction | Table (.xlsx) | Figshare, https://doi.org/10.6084/m9.figshare.25093304.v1 [36] |
Data file 12 | Predicted gene | Gff3 file (.gff3) | Figshare, https://doi.org/10.6084/m9.figshare.25093376.v2 [38] |
Data file 13 | Predicted genes - nucleotide sequences | Fasta file (.fasta) | Figshare, https://doi.org/10.6084/m9.figshare.25093382.v1 [39] |
Data file 14 | Predicted genes - translated sequences | Fasta file (.fasta) | Figshare, https://doi.org/10.6084/m9.figshare.25093385.v1 [40] |
Data file 15 | Gene annotation using GO, Pfam, interPro, UniProt, dbCAN, MEROPS and SignalP databases | Text (.txt) | Figshare, https://doi.org/10.6084/m9.figshare.25093394.v1 [41] |
Data file 16 | Gene annotation from eggNOG-mapper analysis | Text (.txt) | Figshare, https://doi.org/10.6084/m9.figshare.25093397.v1 [42] |