Table 1 Overview of data files/data sets
From: De novo genome assembly of a high-protein soybean variety HJ117
Label | Name of data file/data set | File type (file extension) | Data repository and identifier (DOI or accession number) |
|---|---|---|---|
Data file1 | Statistics on sequence data | Spreadsheet (.xls) | Figshare,https://doi.org/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [12] |
Data file2 | Hi-C raw data | Fastq file (.fastq) | NGDC Genome Sequence Archive, https://ngdc.cncb.ac.cn/gsa/browse/CRA014073 [13] |
Data file3 | Assembly statistics of HJ117 | Spreadsheet (.xls) | Figshare,https://doi.org/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [15] |
Data file4 | genome.fa | Fasta file (.fasta) | NGDC Genome warehouse, https://ngdc.cncb.ac.cn/gwh/Assembly/83716/show [16] |
Data file5 | Hi-C interaction heatmap | Image file (.tif ) | Figshare,https://doi.org/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [17] |
Data file6 | Assessment results of CEGMA and BUSCO | Spreadsheet (.xls) | Figshare,https://doi.org/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [20] |
Data file7 | Results of transposable element classification statistics | Spreadsheet (.xls) | Figshare,https://doi.org/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [23] |
Data file8 | Results of gene structure prediction | Spreadsheet (.xls) | Figshare,https://doi.org/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [25] |
Data file9 | Glycine.max.gene.gff | Gff file (.gff) | Figshare,https://doi.org/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [26] |
Data file10 | Genome annotation of HJ117 | Spreadsheet (.xls) | Figshare,https://doi.org/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [27] |
Data file11 | Overview of the HJ117 reference genome | Image file (.tif ) | Figshare,https://doi.org/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [28] |
Data file12 | Statistics on non-coding RNA annotation results | Spreadsheet (.xls) | Figshare,https://doi.org/10.6084/m9.figshare.24865518figshare.com/s/6de11eca18b3ccef8314 [31] |
Data file13 | Raw RNA reads of leaf tissues | Fastq file (.fastq) | NGDC Genome Sequence Archive, https://ngdc.cncb.ac.cn/gsa/browse/CRA014073 [34] |
Data file14 | HiFi raw data | Fastq file (.fastq) | NGDC Genome Sequence Archive, https://ngdc.cncb.ac.cn/gsa/browse/CRA014073 [35] |