Sample | Raw reads Number | Raw bases | Clean reads | Clean bases | Error rate(%) | Q20 | Q30 | GC | Clean reads Mapped ratio |
---|---|---|---|---|---|---|---|---|---|
CHS 1 | 4.18E + 07 | 6.32E + 09 | 4.14E + 07 | 6.11E + 09 | 0.0255 | 97.92 | 93.7 | 43.44 | 79.42% |
CHS 2 | 4.25E + 07 | 6.41E + 09 | 4.20E + 07 | 6.21E + 09 | 0.0261 | 97.67 | 93.09 | 43.43 | 78.38% |
CHS 3 | 4.70E + 07 | 7.10E + 09 | 4.65E + 07 | 6.85E + 09 | 0.0258 | 97.81 | 93.4 | 43.32 | 78.14% |
DHS 1 | 5.54E + 07 | 8.36E + 09 | 5.50E + 07 | 8.19E + 09 | 0.0258 | 97.80 | 93.32 | 44.69 | 78.90% |
DHS 2 | 5.09E + 07 | 7.68E + 09 | 5.06E + 07 | 7.51E + 09 | 0.0254 | 97.97 | 93.75 | 44.81 | 79.90% |
DHS 3 | 6.07E + 07 | 9.16E + 09 | 6.01E + 07 | 8.86E + 09 | 0.0263 | 97.61 | 92.93 | 44.92 | 80.14% |
SHS 1 | 5.73E + 07 | 8.65E + 09 | 5.69E + 07 | 8.45E + 09 | 0.0256 | 97.87 | 93.54 | 44.19 | 78.42% |
SHS 2 | 4.80E + 07 | 7.24E + 09 | 4.77E + 07 | 7.07E + 09 | 0.025 | 98.15 | 94.12 | 44.36 | 79.31% |
SHS 3 | 4.95E + 07 | 7.48E + 09 | 4.92E + 07 | 7.26E + 09 | 0.0264 | 97.55 | 92.77 | 44.21 | 79.43% |
rHS 1 | 6.34E + 07 | 9.58E + 09 | 6.30E + 07 | 9.24E + 09 | 0.0252 | 98.05 | 93.90 | 44.87 | 81.82% |
rHS 2 | 4.64E + 07 | 7.00E + 09 | 4.60E + 07 | 6.70E + 09 | 0.0254 | 97.95 | 93.75 | 44.49 | 81.45% |
rHS 3 | 6.55E + 07 | 9.89E + 09 | 6.51E + 07 | 9.58E + 09 | 0.0259 | 97.81 | 93.27 | 44.87 | 81.51% |
RHS 1 | 6.28E + 07 | 9.49E + 09 | 6.24E + 07 | 9.22E + 09 | 0.0254 | 97.97 | 93.77 | 44.95 | 80.85% |
RHS 2 | 5.46E + 07 | 8.25E + 09 | 5.42E + 07 | 7.92E + 09 | 0.0253 | 97.99 | 93.84 | 45.17 | 82.42% |
RHS 3 | 5.55E + 07 | 8.38E + 09 | 5.52E + 07 | 8.10E + 09 | 0.0252 | 98.05 | 93.97 | 45.01 | 81.34% |
CHR 1 | 4.86E + 07 | 7.33E + 09 | 4.82E + 07 | 7.11E + 09 | 0.0251 | 98.09 | 94.02 | 44.70 | 80.54% |
CHR 2 | 5.28E + 07 | 7.97E + 09 | 5.23E + 07 | 7.71E + 09 | 0.0258 | 97.78 | 93.33 | 44.66 | 80.29% |
CHR 3 | 5.47E + 07 | 8.27E + 09 | 5.43E + 07 | 8.01E + 09 | 0.0254 | 97.97 | 93.77 | 44.75 | 80.44% |
DHR 1 | 5.37E + 07 | 8.11E + 09 | 5.34E + 07 | 7.90E + 09 | 0.0256 | 97.86 | 93.51 | 45.17 | 80.82% |
DHR 2 | 5.17E + 07 | 7.81E + 09 | 5.13E + 07 | 7.50E + 09 | 0.0253 | 98.00 | 93.88 | 45.42 | 83.16% |
DHR 3 | 5.26E + 07 | 7.94E + 09 | 5.23E + 07 | 7.75E + 09 | 0.025 | 98.14 | 94.13 | 45.01 | 80.16% |
SHR 1 | 5.18E + 07 | 7.82E + 09 | 5.15E + 07 | 7.64E + 09 | 0.0257 | 97.83 | 93.37 | 44.60 | 80.72% |
SHR 2 | 4.87E + 07 | 7.36E + 09 | 4.84E + 07 | 7.16E + 09 | 0.0262 | 97.65 | 92.98 | 44.61 | 80.52% |
SHR 3 | 5.02E + 07 | 7.58E + 09 | 4.99E + 07 | 7.38E + 09 | 0.0254 | 97.98 | 93.77 | 44.66 | 81.55% |
rHR 1 | 5.35E + 07 | 8.08E + 09 | 5.31E + 07 | 7.81E + 09 | 0.0257 | 97.82 | 93.42 | 45.02 | 81.84% |
rHR 2 | 5.18E + 07 | 7.82E + 09 | 5.14E + 07 | 7.59E + 09 | 0.0257 | 97.83 | 93.4 | 44.83 | 81.99% |
rHR 3 | 4.93E + 07 | 7.44E + 09 | 4.90E + 07 | 7.26E + 09 | 0.0254 | 97.98 | 93.77 | 44.71 | 81.35% |
RHR 1 | 5.94E + 07 | 8.96E + 09 | 5.89E + 07 | 8.68E + 09 | 0.0251 | 98.08 | 94.03 | 44.95 | 82.34% |
RHR 2 | 6.55E + 07 | 9.90E + 09 | 6.50E + 07 | 9.54E + 09 | 0.0253 | 98.01 | 93.89 | 44.96 | 82.52% |
RHR 3 | 5.48E + 07 | 8.28E + 09 | 5.44E + 07 | 7.96E + 09 | 0.0254 | 97.96 | 93.78 | 44.92 | 82.62% |