Table 1 Basic information of predicted DCL, AGO, and RDR protein families of P. dactylifera (Pd)
Serial | Protein name | Protein ID | Chromosomal location | CDS (bp) | No of Ex./Int. | Protein | |||
|---|---|---|---|---|---|---|---|---|---|
Len (aa) | M.W. (D) | pI | GRAVY | ||||||
DCL | |||||||||
1 | PdDCL-1 | XP_008783544.2 | chr5; NC_052396.1 (7541438.7558386) | 6275 | 19:18 | 1932 | 217043.2 | 6 | -0.43 |
2 | PdDCL-3a | XP_038975056.1 | chrUn; NW_024067910.1 (148343.226673) | 7331 | 28:29 | 1824 | 206421.7 | 6.3 | -0.3 |
3 | PdDCL-3b | XP_038975924.1 | chrUn; NW_024068062.1 (66741.145337) | 2486 | 26:25 | 714 | 184023.2 | 7.8 | -0.157 |
4 | PdDCL-4 | XP_008793257.2 | chr9; NW_008246593.1 (751820.772764 | 5281 | 25:24 | 1510 | 169709.8 | 6.3 | -0.138 |
AGO | |||||||||
1 | PdAGO-1 | XP_026666285.1 | chrUn; NW_024067681.1 (656667.671825) | 3725 | 23:22 | 1109 | 117304.5 | 9.4 | -0.44 |
2 | PdAGO-2,3 | XP_026665120.2 | chr16; NC_052407.1 (10638701.10642469) | 3242 | 3:2 | 970 | 108819.8 | 9.2 | -0.462 |
3 | PdAGO-4,8,9 | XP_008805343.1 | chr1; NC_052392.1 (27566908.27575426) | 2980 | 25:24 | 852 | 102903.6 | 8.9 | -0.407 |
4 | PdAGO-5 | XP_038990444.1 | chr16; NC_052407.1 (380550.387158) | 3425 | 22:21 | 991 | 110499.3 | 9.3 | -0.523 |
5 | PdAGO-6 | XP_026664236.2 | chr1; NC_052392.1 (23234962.23244557) | 3283 | 24:23 | 906 | 101653.8 | 9.3 | -0.316 |
6 | PdAGO-7 | XP_008787212.2 | chr6; NC_052397.1 (14183313.14187911) | 3894 | 4:3 | 1013 | 114837.4 | 9.3 | -0.419 |
7 | PdAGO-10 | XP_038987839.1 | chr11; NC_052402.1 (23479152.23494653) | 4236 | 26:25 | 973 | 109504.7 | 9.3 | -0.426 |
RDR | |||||||||
1 | PdRDR-1 | XP_008812977.2 | chrUn; NW_024067889.1 (372284.383973) | 3954 | 6:5 | 1131 | 129394.4 | 8.3 | -0.309 |
2 | PdRDR-2 | XP_008780950.1 | chr1; NC_052392.1 (20350773.20361462) | 3670 | 4:3 | 1117 | 126903.6 | 7 | -0.255 |
3 | PdRDR-6 | XP_008778879.2 | chr2; NC_052393.1 (23599135.23610932) | 4231 | 3:2 | 1198 | 135654.2 | 6.3 | -0.287 |