Diet-induced variability of the resistin gene (Retn) transcript level and methylation profile in rats
© Nowacka-Woszuk et al. 2015
Received: 5 June 2015
Accepted: 10 September 2015
Published: 17 September 2015
Adipose tissue is recognized as a highly active metabolic and endocrine organ. The hormones secreted by this tissue play an important role in many biochemical processes. It is known that dysfunction of adipocytes can cause insulin resistance, type 2 diabetes or hyperlipidemia. One of the important factors produced in fat tissue is resistin (Retn). It has been postulated that this hormone is involved in glucose homeostasis and insulin resistance. In the present study, the impact of five diet types (ad libitum normal, restricted, high-carbohydrate, high-fat and high-protein) on the Retn gene transcription and methylation profile was evaluated in rats of different ages.
Transcript levels and methylation status of the Retn gene were studied in three tissues (muscle, subcutaneous and abdominal fat) in rats at 30, 60 and 120 days of age. We found an effect of tissue type on the Retn transcription in all diet types, as well as an effect of feeding type and age on the mRNA levels for high-fat and high-protein diets. The DNA methylation levels depended only on tissue type.
The obtained results demonstrate a tissue-specific expression pattern and a characteristic DNA methylation profile of the Retn gene in rats. Retn expression seems to be sensitive to nutritional changes, but only in the case of high-fat and high-protein diets. Moreover, an effect of age on Retn mRNA content was observed in these diets. Because no correlation between the transcript level and methylation status was found, we assumed that the transcription control of this gene by DNA methylation of the promoter seems to be unlikely.
Obesity is a growing problem worldwide, which results in an increasing number of diagnosed type 2 diabetes characterized by insulin resistance. Adipose tissue is not only an energy reservoir, but also plays an important role as an endocrine organ. It secretes many adipokines, such as leptin, resistin (Retn), adiponectin, visfatin, apelin, and omentin, as well as sex steroids and various growth factors. Retn is cysteine-rich protein belonging to the RELMs (resistin-like molecules) family. The genetic structure of the Retn gene varies between mammals and the similarity in the coding sequence ranges from approximately 60 % for rodents to 80 % for livestock . The expression of this gene in rodents occurs mostly in mature adipocytes, but it was also found in other tissues. Retn is considered a factor linking obesity and insulin resistance. In obesity, its expression increases, leading to enhanced resistance of tissues to insulin .
An interesting issue is how different factors, such as nutrition or age, can modulate expression of the Retn gene. It is known that diet type has an influence on Retn mRNA as well as serum levels in rodents. In mice during fasting the Retn mRNA in the adipose tissue is reduced, while upon refeeding transcription increases. Fasting also reduces circulating Retn concentrations. Conversely, in diet-induced obese mice serum Retn levels are enhanced, while transcription of the Retn gene is decreased (for a review see: ). It is also well documented that aging is associated with changes in gene expression levels in many tissues, including adipose tissue . Moreover, it has been shown that aging leads to both global and local alterations in the DNA methylation profile .
Bearing in mind the role of Retn in the development of obesity, many studies have been performed on animals fed with a high-fat diet (HFD) to serve as a model for human obesity. Such studies, conducted by Kim and Park , found that insulin resistance, dyslipidemia and fatty liver developed in rats with obesity induced by HFD. The authors analyzed the expression levels of different genes in adipose tissue and found that among many genes, Retn, TNF-α and leptin expression levels were upregulated 1.5-, 3.4- and 7.0-fold, respectively, in rats on a HFD when compared with the control group. Interesting studies concerning changes in Retn expression depending on the age of animals were performed by Oliver . They analyzed site-specific Retn expression patterns from 4 different depots (epididymal, inguinal, mesenteric and retroperitoneal) of white adipose tissue (WAT) and brown adipose tissue (BAT), as well as circulating Retn levels. The analysis covered the period from suckling to 1 year of age. In general, it was noticed that in BAT and retroperitoneal WAT, Retn transcription levels were higher than in epididymal, inguinal, and mesenteric WAT depots. Moreover, at 2 months old the mRNA levels decreased in inguinal WAT and increased in epididymal and retroperitoneal WAT. These time-specific differences could be explained by the change of feeding from suckling to a chow diet. However, the Retn transcript levels in BAT were quite stable during the study period, while the circulating levels increased during development as a result of the increasing body fat content . The results mentioned above suggest sensitivity of the Retn expression to nutritional changes.
So far, many studies concerning Retn in the rat focused only on protein levels and incomplete information about transcript levels of the gene is available. Also, most studies tested HFDs; knowledge about other feeding types is quite limited. Thus, the aim of this study was the comprehensive analysis of the impact of different diets and age on Retn transcript levels. Moreover, given the lack of data concerning the epigenetic mechanisms regulating its expression, we also analyzed the DNA methylation profile. The study was performed on two types of adipose tissue, as well as muscle tissues, in animals of different ages.
Tissue sampling was carried out according to standard Polish veterinary protocols. All animal experiments were approved by the local Bioethical Commission for Animal Care and Use in Poznan, Poland (approval No: 7/2009).Treatment of animals was in accordance with the Arrive Guidelines for Reporting Animal Research (Additional File 1: ARRIVE Checklist).
Animals and diets
Male Wistar rats (180 ± 10 g in weight) from Lab Animal Breeding (Brwinow, Poland) were housed under standard conditions (22 ± 2 °C; 12-h light/dark cycles) with unlimited access to water. After 10 days of adaptation, the animals were assigned to 6 different groups (A–F) in terms of diet, divided in two separate experiments. In experiment 1, the animals received one of the following diets: group A = ad libitum normal diet Labofed B; group B = restricted diet (i.e., 75 % dose compared with group A); and group C = high-carbohydrate diet (i.e., normal diet + 40 % starch). In experiment 2, the animals received one of the follow diets: group D = ad libitum normal diet Labofed B; group E = high-fat diet (i.e., normal diet + 20 % triglycerides); and group F = high-protein diet (i.e., normal diet + 20 % soy protein). All animals were euthanized by decapitation. Tissue samples (muscle = MT, subcutaneous fat = ST, and abdominal fat = AFT) from each of the diet groups were collected at three time points (30, 60 and 120 days of age). Each diet*age group consisted of 8 animals.
PCR primer sequences, amplicon length and annealing temperature used in Retn gene analysis
Type of analysis
Transcript level analysis
F: 5′ CCACGTACTTAACAGGATG 3′
R: 5′ GAGGAGACTGACCAGCAAT 3′
F: 5′ CAGTCAACGGGGGACATAAAAG 3′
R: 5′ ATTTTGGGGCTGTACTGCTTGA 3′
F: 5′ ATCCTTCACCAATGACTCCTATG 3′
R: 5′ ATGATGACTGCAGCAAACC 3′
Methylation analysis (converted sequence)
F: 5′ GTGGAAAGGAGGAATGTATTATTTG3′
Methylation analysis and detection of CpG islands
Associations between diets and transcript levels, as well as diets and methylation levels, were evaluated using linear fixed models. The models for both experiments were identical. We started from long models the included the tissue, age (as a factor), diet and three two-way interactions between these variables as fixed factors. Because in experiment 1 we obtained only one significant effect of interaction (diet-by-age; P = 0.028) and for experiment 2 we did not calculate any significant effects of interactions, we excluded all interactions effects from the models. To obtain a normal distribution of residuals in an ANOVA, the data concerning the transcript level were logarithmically transformed. Normality of the distribution was tested by the Kolmogorov–Smirnov test.
The linear relationship between transcript (in log scale) and methylation levels was expressed as Pearson’s correlation after adjusting for fixed effects. To adjust for fixed effects, both traits were first analyzed in the linear models described above and residuals were extracted for correlation calculation. All statistical calculations and plots were performed using R software v3.1.1 (R Development Core Team).
Results and discussion
Retn gene transcript levels in restricted and high-carbohydrate diets versus control
The relative transcript level of the Retn was analyzed in three tissues (MT, ST and AFT) and the highest concentration was found in both fat tissues, while in MT it was almost a hundred times lower. In experiment 1, in which three feeding types were compared [normal (A), restricted (B) and high-carbohydrate (C) diets], the statistical analysis showed significant differences in transcript levels depending on tissue type (P = 1.7 × 10−13). There was no effect of the diet type (P = 0.129) or age of the animals (P = 0.142). However, in the restricted diet group an increase in transcription was noticed in AFT and MT at 60 days of age. This is in agreement with previous findings described by Oliver , in which an increase of Retn mRNA levels (in 2-month-old rats) was found in epididymal and retroperitoneal WAT. Those authors observed similar results also for other genes such as Leptin or UPC2 for different depots of WAT. They explained that this type of reaction could have been caused by the feeding system change (from milk to chow diet). The impact of food restriction versus an ad libitum diet on the mRNA levels of the Retn gene in three age groups of rats (3, 8 and 24 months old) was analyzed by Fernandez . In ad libitum fed animals, they found a significant reduction of mRNA levels in epididymal visceral adipose tissue (VAT) in 8- and 24-month-old rats when compared with 3-month-old animals, while there was no effect of age in retroperitoneal VAT. Conversely, food restriction resulted in a greater decrease of Retn transcript contents in 8- than 3-month-old animals in both analyzed VAT depots, while in 24-month-old rats the mRNA levels were much higher than in 8-month-old ones. Food restriction in terms of the Retn and adiponectin expression in VAT and ST adipose tissue was also studied by Milan . They compared lean and obese (Zucker) rats. The authors observed a significant reduction of adiponectin and Retn expression levels only in VAT of obese rats when compared with lean ones. After food restriction, the adiponectin expression levels were restored to the normal, in contrast with Retn, for which levels decreased continuously.
In the high-carbohydrate diet, we noticed a decrease of the transcript levels in ST and MT depending on the age of the animal, in contrast with AFT fat where it increased; however, the observed trends were not significant (data not shown). This type of diet was also analyzed by Stroubini , who investigated serum Retn concentrations. These authors found that a high-carbohydrate diet reduced circulating levels of Retn when compared with high-fat and high-protein feeding. Unfortunately, they did not test the tissue Retn transcript levels; thus, it is hard to compare their results with our observations. A high-sucrose diet was studied by Polson and Thompson ; however, the authors did not notice any significant effects of this type of diet on mRNA levels of Retn in WAT, which is in agreement with our results.
Retn gene transcript levels in high-fat and high-protein diets versus control
The effects of a HFD (cafeteria diet, CAF) was analyzed by Ribot , who measured serum as well as tissue adiponectin and Retn levels in rats of both sexes. mRNA levels were analyzed in different WAT depots: gonadal, retroperitoneal (visceral) and inguinal (subcutaneous). It was found that the CAF diet increased energy intake and weight of adipose tissue (more significantly in females). Moreover, the effective adiponectin and Retn production (the parameter calculated as a serum level of both adipokines divided by the total weight of WAT depots) was decreased in the CAF group. In three WAT depots, there was no difference in adiponectin mRNA levels in response to the CAF diet. In agreement with our findings, the Retn transcript levels were reduced in CAF-fed male and female rats in gonadal WAT depots. A similar trend (although non-significant) was also observed for females in retroperitoneal and inguinal WAT, suggesting sex specific differences .
Methylation analysis of the Retn gene
Interesting studies including epigenetic factors were undertaken by Satoor . Firstly, they analyzed the transcript levels of different adipokines in 8 adipose fat depots and observed that mRNA concentrations of adiponectin, leptin, Retn and visfatine genes were 10,000 to a million-fold lower in VAT than in ST. Thus, the authors performed an autologous transplantation of VAT into peripheral (ST) sites to determine the metabolic effects. After transplantation into thigh or chest regions, the transcription levels of four studied genes increased in the VAT grafts. To verify if the observed changes were an effect of higher expression or lower mRNA degradation, the authors performed ChIP analysis to check the histone-methylation antibodies to active (H3K4) or inactive (H3K9) marks of lysine methylation. They found that promoter regions of the studied genes acquired methylation at H3K4me2 after transplantation. This region recruits less LSD1 and/or KMT1a enzymes, known as regulators of chromatin compaction and transcription repressors, causing an increase of transcription in grafts when compared with the original depots. Unfortunately, the authors did not determine the DNA methylation profiles . In our studies, we did not analyze histone modifications; however, the regulation of Retn transcription through this mechanism could be possible. Because the Retn locus is poor in CG rich regions, we have analyzed only a small fragment upstream of the gene. However, it cannot be excluded that other CpG islands located near or within the Retn gene may also influence expression via other than classic promoter regulation mechanisms. Based on the Genome Browser Database (https://genome.ucsc.edu/index.html) for humans, it has been shown that a CpG island of the RETN is located within the gene body. Our analysis of the corresponding region in the rat genome did not indicate such a sequence. It can be expected that the availability of more accurate databases for the rat will allow the identification of other potential CpG islands in the Retn locus.
Based on the obtained results, we can conclude that tissue type has the highest significance for Retn transcript levels. Diet- and age-induced alternations in transcript levels were observed in HFD and HPD. However, no influence of diet on DNA methylation and no correlation of methylation with transcript levels were observed. Thus, we assume that transcription regulation of the rat Retn gene by DNA methylation of its promoter is doubtful. However, it cannot be excluded that other CpG islands are involved in Retn regulation; however, the lack of information concerning their location makes such analysis difficult. Also, other epigenetic processes, including histone modifications, should be taken into consideration.
This study was supported by the Polish Ministry of Science and Higher Education, project no. N N303 551639. Special thanks to Prof. M. Switonski, Head of the Department of Genetics and Animal Breeding, for scientific support and his valuable comments during the realization of the project.
Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
- Sassek M, Pruszynska-Oszmalek E, Nowacka-Woszuk J, Szczerbal I, Szczepankiewicz D, Kaczmarek P, et al. Resistin - from gene expression to development of diabetes. J Biol Regul Homeost Agents. 2013;27:647–54.PubMedGoogle Scholar
- Li Y, Ding L, Hassan W, Abdelkader D, Shang J. Adipokines and hepatic insulin resistance. J Diabetes Res. 2013; doi:10.1155/2013/170532.
- Park HK, Ahima RS. Resistin in rodents and humans. Diabetes Metab J. 2013; doi:10.4093/dmj.2013.37.6.404.
- Glass D, Viñuela A, Davies MN, Ramasamy A, Parts L, Knowles D, et al. Gene expression changes with age in skin, adipose tissue, blood and brain. Genome Biol. 2013;14(7):R75.PubMed CentralView ArticlePubMedGoogle Scholar
- Marttila S, Kananen L, Häyrynen S, Jylhävä J, Nevalainen T, Hervonen A, et al. Ageing-associated changes in the human DNA methylome: genomic locations and effects on gene expression. BMC Genomics. 2015;16:179.PubMed CentralView ArticlePubMedGoogle Scholar
- Kim YJ, Park T. Genes are differentially expressed in the epididymal fat of rats rendered obese by a high-fat diet. Nutr Res. 2008;28:414–22.View ArticlePubMedGoogle Scholar
- Oliver P, Picó C, Serra F, Palou A. Resistin expression in different adipose tissue depots during rat development. Mol Cell Biochem. 2003;252:397–400.View ArticlePubMedGoogle Scholar
- Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002;18(7):3. RESEARCH0034.Google Scholar
- Rong C, Cui X, Chen J, Qian Y, Jia R, Hu Y. DNA methylation profiles in placenta and its association with gestational diabetes mellitus. Exp Clin Endocrinol Diabetes. 2015;123:282–8.View ArticlePubMedGoogle Scholar
- Fernández CM, Moltó E, Gallardo N, del Arco A, Martínez C, Andrés A, et al. The expression of rat resistin isoforms is differentially regulated in visceral adipose tissues: effects of aging and food restriction. Metabolism. 2009;58:204–11.View ArticlePubMedGoogle Scholar
- Milan G, Granzotto M, Scarda A, Calcagno A, Pagano C, Federspil G, et al. Resistin and adiponectin expression in visceral fat of obese rats: effect of weight loss. Obes Res. 2002;10:1095–103.View ArticlePubMedGoogle Scholar
- Stroubini T, Perelas A, Liapi C, Perrea D, Dontas I, Tzavara C, et al. Serum adiponectin and resistin in rats under three isocaloric diets: The effect of sibutramine. Cytokine. 2009;46:171–5.View ArticlePubMedGoogle Scholar
- Polson DA, Thompson MP. Adiponutrin mRNA expression in white adipose tissue is rapidly induced by meal-feeding a high-sucrose diet. Biochem Biophys Res Commun. 2003;301:261–6.View ArticlePubMedGoogle Scholar
- Ribot J, Rodríguez AM, Rodríguez E, Palou A. Adiponectin and resistin response in the onset of obesity in male and female rats. Obesity. 2008;16:723–30.View ArticlePubMedGoogle Scholar
- Feil R, Fraga MF. Epigenetics and the environment: emerging patterns and implications. Nat Rev Genet. 2012;13:97–109.PubMedGoogle Scholar
- Sie KK, Li J, Ly A, Sohn KJ, Croxford R, Kim YI. Effect of maternal and postweaning folic acid supplementation on global and gene-specific DNA methylation in the liver of the rat offspring. Mol Nutr Food Res. 2013;57:677–85.View ArticlePubMedGoogle Scholar
- Ruemmele FM, Garnier-Lengliné H. Why are genetics important for nutrition? Lessons from epigenetic research. Ann Nutr Metab. 2012;60 Suppl 3:38–43.View ArticlePubMedGoogle Scholar
- Waterland RA, Lin JR, Smith CA, Jirtle RL. Post-weaning diet affects genomic imprinting at the insulin-like growth factor 2 (Igf2) locus. Hum Mol Genet. 2006;15:705–16.View ArticlePubMedGoogle Scholar
- Vucetic Z, Kimmel J, Reyes TM. Chronic high-fat diet drives postnatal epigenetic regulation of μ-opioid receptor in the brain. Neuropsychopharmacology. 2011;36:1199–206.PubMed CentralView ArticlePubMedGoogle Scholar
- Ronn T, Volkov P, Davegardh C, Dayeh T, Hall E, Olsson AH, et al. A six months exercise intervention influences the genome-wide DNA methylation pattern in human adipose tissue. PLoS Genet. 2013;9:e1003572.PubMed CentralView ArticlePubMedGoogle Scholar
- Benton MC, Johnstone A, Eccles D, Harmon B, Hayes MT, Lea RA, et al. An analysis of DNA methylation in human adipose tissue reveals differential modification of obesity genes before and after gastric bypass and weight loss. Genome Biol. 2015;16:8.PubMed CentralView ArticlePubMedGoogle Scholar
- Satoor SN, Puranik AS, Kumar S, Williams MD, Ghale M, Rahalkar A, et al. Location, location, location: Beneficial effects of autologous fat transplantation. Sci Rep. 2011;1:81.PubMed CentralView ArticlePubMedGoogle Scholar